DeCure's autonomous Cancer AI scientist is researching a drug-repurposing hypothesis for spinal cord ependymoma — screening already-approved drugs against its 5-gene Open Targets disease module to publish open-access research. Research is fast; the path to publication is funded in milestone stages.
Disease moduleSpinal cord ependymoma maps to a 5-gene Open Targets module — the target space DeCure's AI scientist screens approved drugs against.
DeCure.ai methodSignature reversal (LINCS) plus network proximity (STRING) rank already-approved drugs likely to perturb this module — the same engine that produces DeCure.ai's repurposing hypotheses.
Repurposing thesisScreening approved medicines against this disease module, then publishing the evidence for the strongest candidate. Known pharmacology and human exposure data make the first question sharper — they do not establish safety or efficacy in a new indication.
Research record
01
ResearchComing soon
Candidate research + dossier — target rationale, drug-repurposing thesis and evidence pack.proof: Published dossier + on-chain hash
02
ValidationComing soon
In-vitro biological validation at a contract research org (CRO).proof: CRO contract + in-vitro report
03
Peer review & paperComing soon
Peer-reviewed paper published open-access (preprint + journal).proof: DOI + open-access link + on-chain hash
Current lead
No approved-drug candidate for spinal cord ependymoma is corroborated in the literature DeepSearch retrieved. Some conditions are managed with non-pharmacological care — a device, surgery or physical therapy — rather than a medicine; that may be the case here, or the literature we found may simply be too sparse yet to support a drug-repurposing angle.
Molecular view
NF2, moesin-ezrin-radixin like (MERLIN) tumor suppressor (NF2) — NF2 is one of the genes genetically linked to this disease in Open Targets — shown as context, not as a drug target we're pursuing: no approved-drug candidate for this disease is yet corroborated in the literature we found.
Loading structure…
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RCSB Protein Data Bank · entry 6CDS · 2.62 Å · ligand [(2R)-2-octanoyloxy-3-[oxidanyl-[(1R,2R,3S,4R,5R,6S)-2,3,6-tris(oxidanyl)-4,5-diphosphonooxy-cyclohexyl]oxy-phosphoryl]oxy-propyl] octanoate (PIO). Experimental structure, not a prediction.
What the evidence adds up to
In seven patients with sporadic intramedullary spinal cord ependymomas, five harboured detectable mutations in the NF2 gene transcript, all of which truncated the predicted protein product in a region homologous to cytoskeletal proteins. This 1996 study concluded that NF2 transcript mutations occur in the majority of such tumours and likely render the protein inactive. No treatment or survival data were reported.
A 2011 retrospective review of 67 intramedullary spinal ependymomas treated between 1983 and 2006 reported a mean age of 45.6 years and a male-to-female ratio of 2:1. Gross total resection was achieved in 55 patients and subtotal resection in 12; nine patients received adjuvant radiation therapy. Mean follow-up was 32 months. Mean McCormick neurological grade at last follow-up was 2.0. Preoperative outcome correlated significantly with postoperative outcome (P < .001). Outcomes were significantly worse after subtotal resection with or without radiation (P < .05). There were three recurrences. The overall complication rate was 34%, primarily wound infections or cerebrospinal fluid leaks. The authors concluded that aggressive surgical resection carries a high complication rate but that gross total resection yields excellent outcomes and a low recurrence rate.
An earlier 1988 series of 11 patients treated between 1967 and 1983 reported that all had undergone surgery once or twice before radiation. Six were alive and disease-free 78 to more than 180 months after radiation therapy. A 1994 study of 78 patients (median follow-up 14 years for 59 without recurrence, 12 years for 19 who had second operations for relapse) found that length of clinical history, gross appearance of the tumour at first operation, and type of excision were significant predictors of recurrence (P < 0.05, P < 0.05, and P < 0.001 respectively). The authors stated that in the event of recurrence, spinal ependymoma has an adverse prognosis.
A 2018 case-based review noted that ependymomas in adults are rare, occur most commonly in the spinal cord, and are graded WHO I–III. It stated that genetic heterogeneity exists within histological subgroups and that tumours from different CNS locations have different molecular signatures, renewing interest in molecularly targeted therapies given variable outcomes with radiation and poor results with cytotoxic agents. No new trial data were presented. What remains missing are prospective trials that stratify patients by molecular subtype, adequately powered studies comparing surgical strategies with and without adjuvant radiation, and funding for the development of targeted therapies based on the NF2 and other genetic alterations identified in these tumours.
Evidence
Retrieved by DeepSearch across 234,678,978 indexed works and resolved on OpenAlex — ranked by citations, including the results that did not work.
Neurosurgery · 1996 · 101 citations
Frequent Type 2 Neurofibromatosis Gene Transcript Mutations in Sporadic Intramedullary Spinal Cord Ependymomas
AbstractOBJECTIVE: To further investigate the role of Type 2 neurofibromatosis (NF2) gene transcript mutations in the sporadically occurring counterparts of NF2-associated tumors. METHODS: Reverse transcription-polymerase chain reaction followed by agarose gel electrophoresis, single strand conformation polymorphism analysis, and automated deoxyribonucleic acid sequence analysis were used to screen for mutations in the NF2 gene transcript in seven unrelated patients with sporadic intramedullary spinal cord ependymomas. RESULTS: Five of seven intramedullary spinal cord ependymomas harbored detectable mutations. All of these mutations occurred in the region of the transcript that is homologous to known cytoskeletal proteins and resulted in significant truncation of the predicted protein product. CONCLUSION: Mutations of the NF2 transcript occur in the majority of sporadic intramedullary spinal cord ependymomas. These mutations are frequent in a region of the transcript that is homologous to a family of cytoskeletal proteins, and they probably render the protein product inactive. These results add to the body of knowledge concerning the role of the NF2 gene transcript in tumorigenesis.
Surgical Technique and Outcomes in the Treatment of Spinal Cord Ependymomas, Part 1: Intramedullary Ependymomas
AbstractBACKGROUND: Intramedullary spinal ependymomas are rare tumors. OBJECTIVE: To provide a large retrospective review in the modern neuroimaging era from a tertiary center where aggressive surgical resection is favored. METHODS: Charts of intramedullary spinal ependymomas treated between 1983 and 2006 were reviewed. RESULTS: Sixty-seven cases were reviewed. The mean age was 45.6 years (range, 11-78 years) with a male-to-female ratio of 2:1. The most common location was the cervical spine, followed by the thoracic and lumbar spine. The average duration of symptoms was 33 months, with the most common symptom being pain and/or dysesthesias, followed by weakness, numbness, and urinary or sexual symptoms. Gross total resection was achieved in 55 patients and a subtotal resection was performed in 12 patients; 9 patients were treated with adjuvant radiation therapy. Mean follow-up was 32 months. The mean McCormick neurological grade at last follow-up was 2.0. The preoperative outcome correlated significantly with postoperative outcome (P < .001). A significant number of patients who initially worsened improved at their 3-month follow-up examination. Outcomes were significantly worse in patients undergoing subtotal resection with or without radiation therapy (P < .05). There were 3 recurrences. The overall complication rate was 34%. The primary complications were wound infections or cerebrospinal fluid leaks. CONCLUSION: Spinal cord ependymomas are difficult lesions to treat. Aggressive surgical resection is associated with a high overall complication rate. However, when gross total resection can be achieved, overall outcomes are excellent and the recurrence rate is low.
Acta Oncologica · 1988 · 43 citations · open access
Postoperative Management of Primary Spinal Cord Ependymomas
AbstractTreatment and final outcome of 11 patients with primary spinal cord ependymomas admitted between 1967 and 1983 have been reviewed. All patients had undergone surgery once or twice before radiation treatment. Six of them are alive and disease-free 78 months to more than 180 months after radiation therapy. A short analysis of the recent literature is presented with special emphasis on the most frequent treatment techniques, extension of radiation fields and doses. The value of postoperative radiation therapy and the complications of both surgery and radiotherapy are analyzed. Some guidelines for treatment are finally discussed and proposed.
AbstractSTUDY DESIGN: A study was conducted on 78 patients with spinal ependymoma. The authors divided the patients in two groups. OBJECTIVES: The aim was to elicit the risk factors for recurrence and the fate of patients who underwent second operations. SUMMARY OF BACKGROUND DATA: Group A is made up of 59 patients with no signs of recurrence at follow-up (median 14 years), and group B is made up of 19 patients who had undergone second operations because of relapses (follow-up median 12 years). METHODS: The clinical and therapeutic characteristics and survival of the two groups were compared statistically. RESULT: Analysis of the series shows that the most important points in predicting recurrence are length of clinical history (P < 0.05), gross appearance of the tumor at first operation (P < 0.05), and type of excision (P < 0.001). CONCLUSION: These factors proved to be closely interrelated. In the event of recurrence, spinal ependymoma has an adverse prognosis.
Neuro-Oncology Practice · 2018 · 18 citations · open access
Case-based review: ependymomas in adults
AbstractEpendymomas are rare primary central nervous system (CNS) tumors in adults. They occur most commonly in the spinal cord, and have classically been graded histologically into World Health Organization (WHO) grades I, II, or III based on the level of anaplasia. Recent data are showing that genetic heterogeneity occurs within the same histological subgroup and that ependymomas arising from different CNS locations have different molecular signatures. This has renewed interest in developing targeting therapies based on molecular profiles especially given the variable outcomes with radiation and the poor results with cytotoxic agents. In this paper, we present the case of a 46-year-old woman with a classic presentation of spinal cord ependymoma and discuss the current histopathological and molecular classification for ependymomas as well as current guidelines for patient management.
INDIGO (University of Illinois at Chicago) · 2021 · 0 citations · open access
sj-docx-1-tan-10.1177_17562864211055694 – Supplemental material for Surgical outcome and prognostic factors in spinal cord ependymoma: a single-center, long-term follow-up study
AbstractSupplemental material, sj-docx-1-tan-10.1177_17562864211055694 for Surgical outcome and prognostic factors in spinal cord ependymoma: a single-center, long-term follow-up study by Oliver Gembruch, Mehdi Chihi, Merle Haarmann, Ahmet Parlak, Marvin Darkwah Oppong, Laurèl Rauschenbach, Anna Michel, Ramazan Jabbarli, Yahya Ahmadipour, Ulrich Sure, Philipp Dammann and Neriman Özkan in Therapeutic Advances in Neurological Disorders
Disease module: DeepOracle (Open Targets). Structures: RDKit from PubChem SMILES. Literature: retrieved by DeepSearch across 234,678,978 indexed works (targeted per-candidate search), resolved on OpenAlex.
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