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DeCure for Hypomyelinating leukodystrophy 5

DeCure's autonomous Neuro AI scientist is researching a drug-repurposing hypothesis for hypomyelinating leukodystrophy 5 — screening already-approved drugs against its 2-gene Open Targets disease module to publish open-access research. Research is fast; the path to publication is funded in milestone stages.

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The disease map

Disease moduleHypomyelinating leukodystrophy 5 maps to a 2-gene Open Targets module — the target space DeCure's AI scientist screens approved drugs against.
DeCure.ai methodSignature reversal (LINCS) plus network proximity (STRING) rank already-approved drugs likely to perturb this module — the same engine that produces DeCure.ai's repurposing hypotheses.
Repurposing thesisScreening approved medicines against this disease module, then publishing the evidence for the strongest candidate. Known pharmacology and human exposure data make the first question sharper — they do not establish safety or efficacy in a new indication.

Research record

01
ResearchComing soon
Candidate research + dossier — target rationale, drug-repurposing thesis and evidence pack.proof: Published dossier + on-chain hash
02
ValidationComing soon
In-vitro biological validation at a contract research org (CRO).proof: CRO contract + in-vitro report
03
Peer review & paperComing soon
Peer-reviewed paper published open-access (preprint + journal).proof: DOI + open-access link + on-chain hash

Current lead

No approved-drug candidate for hypomyelinating leukodystrophy 5 is corroborated in the literature DeepSearch retrieved. Some conditions are managed with non-pharmacological care — a device, surgery or physical therapy — rather than a medicine; that may be the case here, or the literature we found may simply be too sparse yet to support a drug-repurposing angle.

What the evidence adds up to

A 2012 case report describes a 20-year-old man with 4H syndrome (ataxia, hypomyelination, hypodontia, hypogonadotropic hypogonadism) who also had late-onset growth hormone deficiency without overt growth failure. He carried two novel missense mutations in POLR3A, R1005H and A1331T. The authors note this is the first report of this leukodystrophy from southeastern Europe and suggest POLR3A mutations should be suspected in patients with hypomyelination and central nervous system–based endocrine abnormalities.

A 2017 commentary describes the discovery of a recurrent de novo mutation in TMEM106B, c.754G>A (p.Asp252Asn), in four unrelated patients with hypomyelinating leukodystrophy. All presented with early-onset nystagmus, hypotonia, delayed motor development, and variable intellectual disability and epilepsy. In one family the mutation was transmitted from a mosaic father who expressed about 25% mutant TMEM106B in leucocytes; at age 65 he had normal cognition and no obvious neurological abnormalities despite nystagmus and developmental delay in infancy. The commentary notes that the effect of the specific mutation on TMEM106B expression or function was not studied in vitro or in patient material, so discussion of disease mechanism remains speculative. It also notes that TMEM106B levels appear tightly regulated and that either too much or too little may have devastating consequences.

A 2024 study reports three patients with heterozygous de novo variants in HSPD1 involving residue Ala536 of HSP60 (one novel p.Ala536Pro, one previously reported p.Ala536Val). Clinical features included early-onset nystagmus, tremor, hypotonia evolving into spasticity and ataxia, and childhood-onset neuroregression in one case. Brain MRI showed diffuse hypomyelination. In vitro reconstitution and patient fibroblast analysis demonstrated aberrant chaperonin protein complex assembly, and the authors provide evidence that impaired oligomerisation of the chaperonin complex may underlie this phenotype, possibly through a dominant negative effect.

What is still missing for these genetic forms of hypomyelinating leukodystrophy is systematic functional studies of the specific mutations in relevant cell types, particularly oligodendrocytes, and larger patient cohorts to establish genotype-phenotype correlations. No therapy has been tested in any controlled trial for any of these genetic subtypes. The field lacks animal models for the TMEM106B and HSPD1 mutations that recapitulate the human disease, and there is no funding mechanism dedicated to developing treatments for these ultra-rare disorders. Patient stratification by precise genetic diagnosis is only beginning.

Evidence

Retrieved by DeepSearch across 234,678,978 indexed works and resolved on OpenAlex — ranked by citations, including the results that did not work.

Archives of Neurology · 2012 · 58 citations

4H Syndrome With Late-Onset Growth Hormone Deficiency Caused by POLR3A Mutations

AbstractOBJECTIVE: To report a novel clinical and genetic presentation of a patient with 4H syndrome, which is a recently described leukodystrophy syndrome characterized by ataxia, hypomyelination, hypodontia, and hypogonadotropic hypogonadism. DESIGN: Case report. SETTING: University teaching hospital. PATIENT: A 20-year-old male patient with 4H syndrome. RESULTS: The patient was found to have delayed tooth eruption and a late-onset growth hormone deficiency without overt growth failure. He was a compound heterozygote for the novel missense mutations R1005H and A1331T of POLR3A, which codes for the largest subunit of RNA polymerase III. CONCLUSION: This is the first report of this type of leukodystrophy from southeastern Europe, which suggests that POLR3A mutations should be suspected in patients with hypomyelination and various central nervous system–based endocrine abnormalities.

https://doi.org/10.1001/archneurol.2011.1963
Frontiers in Cellular Neuroscience · 2021 · 19 citations · open access

POLR3-Related Leukodystrophy: Exploring Potential Therapeutic Approaches

AbstractLeukodystrophies are a class of rare inherited central nervous system (CNS) disorders that affect the white matter of the brain, typically leading to progressive neurodegeneration and early death. Hypomyelinating leukodystrophies are characterized by the abnormal formation of the myelin sheath during development. POLR3-related or 4H (hypomyelination, hypodontia, and hypogonadotropic hypogonadism) leukodystrophy is one of the most common types of hypomyelinating leukodystrophy for which no curative treatment or disease-modifying therapy is available. This review aims to describe potential therapies that could be further studied for effectiveness in pre-clinical studies, for an eventual translation to the clinic to treat the neurological manifestations associated with POLR3-related leukodystrophy. Here, we discuss the therapeutic approaches that have shown promise in other leukodystrophies, as well as other genetic diseases, and consider their use in treating POLR3-related leukodystrophy. More specifically, we explore the approaches of using stem cell transplantation, gene replacement therapy, and gene editing as potential treatment options, and discuss their possible benefits and limitations as future therapeutic directions.

https://doi.org/10.3389/fncel.2020.631802
Brain · 2017 · 3 citations · open access

TMEM106B and myelination: rare leukodystrophy families reveal unexpected connections

AbstractThis scientific commentary refers to ‘A recurrent de novo mutation in TMEM106B causes hypomyelinating leukodystrophy’, by Simons et al. (doi:10.1093/brain/awx314). Leukodystrophies are a group of rare genetic disorders that affect the CNS by disrupting the growth or maintenance of the myelin sheath that insulates nerve cells. A classification system based on the pathological mechanisms responsible for the white matter pathology was recently proposed, reserving the term hypomyelinating leukodystrophies (HLDs) for those diseases with a primary or predominant involvement of oligodendrocytes and/or myelin and a permanent deficiency in the formation or deposition of myelin (in contrast to demyelinating leukodystrophies in which the integrity of myelin is disrupted after its formation) (van der Knaap and Bugiani, 2017). HLDs are genetically and clinically diverse; however, most patients present in the neonatal or infantile period with a combination of hypotonia and nystagmus and a range of possible additional symptoms including developmental delay, ataxia, spasticity intellectual disability. Pelizaeus-Merzbacher disease (PMD) is the archetypical HLD caused by mutations in the gene encoding proteolipid protein 1 (PLP1), a primary constituent of myelin. However, more than a dozen additional HLD genes have been identified with a wide range of functions involved in different cellular processes: from RNA and protein synthesis to endolysosomal trafficking (Fig. 1) (Baskin et al., 2016; Charzewska et al., 2016; Edvardson et al., 2016). In this issue of Brain, Simons and co-workers reveal an intriguing connection between TMEM106B, a relatively unknown transmembrane protein localized to the lysosomal membrane, and HLD through the identification of a recurrent de novo TMEM106B mutation in four families (Simons et al., 2017). Overview of known disease genes for classical hypomyelinating leukodystrophies (HLDs). For each HLD-associated protein, the primary subcellular localization is reported as well as its primary known function(s) (Baskin et al., 2016; Charzewska et al., 2016; Edvardson et al., 2016). Nomenclature and numbering of HLD1 through HLD13 is in accordance with the OMIM database (https://www.omim.org/), while the newly identified HLD gene, TMEM106B, was temporarily assigned the acronym HLD14. PM = plasma membrane. Two unrelated patients recruited and studied on different continents by independent research groups formed the basis for the discovery. Researchers from the Care4Rare Canada Consortium and the Amsterdam Database of Unclassified Leukoencephalopathies in The Netherlands each diagnosed a patient with PMD-like disease based on the presence of nystagmus and hypotonia shortly after birth, delayed motor development, and prominent hypomyelination on brain MRI; however, genetic testing excluded mutations in PLP1. As a result of the childhood onset of disease and absence of family history, trio exome sequencing was performed in both families and, remarkably, the same de novo mutation c.754G>A (p.Asp252Asn) in TMEM106B was identified in both patients. Through effective use of the GeneMatcher website, which enables connections between researchers dealing with ‘unsolved exomes’, the researchers noted the strong overlap in clinical presentation and identical gene mutation, suggesting a potential causal role for this mutation in their patients. The study of exome data from 10 additional trios from The Netherlands and one unrelated patient from Canada, identified another two unrelated patients carrying the same c.754G>A mutation. Each of the four unrelated patients had the classical clinical presentation of hypomyelination with early-onset nystagmus, hypotonia and delayed motor development with variable degrees of intellectual disability and epilepsy. In one family the mutation was found to be transmitted from the father, who is a mosaic for the p.Asp252Asn mutation, to the affected child. The father expresses approximately 25% mutant TMEM106B, according to quantification of expression in leucocytes. While this presumably led to nystagmus and developmental delay in infancy, the currently 65-year-old male has normal cognition and no obvious neurological abnormalities. TMEM106B was first reported in 2010 as a genetic risk factor for frontotemporal lobar degeneration with pathologically confirmed TDP-43 pathology (FTLD-TDP), a neurodegenerative disease characterized by the preferential atrophy of the frontal and temporal lobes (Nicholson and Rademakers, 2016). Subsequent studies provided strong support for TMEM106B as a disease modifier, especially in patients with FTLD-TDP with loss-of-function mutations in progranulin (GRN), a neurotrophic growth factor that is processed into possibly functionally active granulin peptides within lysosomes. While the basis for the risk/protective effect of TMEM106B is still being studied, available data suggest that an increase in TMEM106B levels is cytotoxic and is associated with increases in lysosomal size and reduced lysosomal acidification, leading to the disruption of endolysosomal- and autophagic-lysosomal degradation (Nicholson and Rademakers, 2016). Lowering TMEM106B levels has therefore been suggested as a potential therapeutic avenue in patients with GRN mutations, and it was recently reported that Tmem106b deletion can normalize lysosomal protein levels in Grn−/− mice and rescue FTLD-related behavioural abnormalities and retinal degeneration in this model (Klein et al., 2017). However, TMEM106B knockdown may not be completely without consequences. Studies in neuronal cultures suggested mild effects on lysosomal trafficking, and the activity of several lysosomal enzymes was reduced in Tmem106b−/− mice, arguing for a tight regulation of TMEM106B in vivo (Nicholson and Rademakers, 2016; Klein et al., 2017). In line with these observations, relatively mild effects on the expression levels of TMEM106B were observed in individuals carrying the TMEM106B risk (increased expression) or TMEM106B protective (decreased expression) alleles (Nicholson and Rademakers, 2016). Intriguingly, the same TMEM106B variant(s) implicated in FTLD-TDP were recently identified in an unbiased screen for genetic modifiers of healthy brain ageing, with increased inflammation, neuronal loss, and cognitive deficits in brain specimens of TMEM106B risk allele carriers (Rhinn and Abeliovich, 2017). This study suggested an inappropriate polarization of microglia and other innate immune myeloid cells toward a pro-inflammatory state in TMEM106B risk allele carriers, yet the authors did not rule out a function for TMEM106B in neurons. The current study by Simons and colleagues in this issue of Brain (Simons et al., 2017) is the first to link TMEM106B to oligodendrocytes and myelination, unveiling an unexplored area of research into TMEM106B function and disease mechanisms. Unfortunately, the effect of the specific p.Asp252Asn mutation on TMEM106B expression and/or function was not studied in vitro or in patient material, and discussion of the potential disease mechanism is consequently speculative at this time. The close vicinity of the p.Asp252Asn mutation to one of the sites requiring complex glycosylation for proper TMEM106B transport, sorting and probably function (Nicholson and Rademakers, 2016), combined with the fact that all patients carried the exact same de novo mutation supports the hypothesis of a loss-of-function disease mechanism, although a gain of toxic function associated with the specific mutation cannot yet be excluded. Since all patients were heterozygous for the mutation, a dominant-negative disease mechanism may in fact be at play. The majority of HLD genes are transmitted as autosomal recessive disorders or are x-linked (PLP1) with the notable exception of TUBB4A, in which the heterozygous p.Asp249Asn mutation was shown to cause HLD with atrophy of the basal ganglia and cerebellum. In the latter case, a dominant-negative effect of the mutation presumably led to the loss or inefficient dimerization of microtubules (Simons et al., 2013; Charzewska et al., 2016). Given that PLP1 is one of the main structural components of the myelin sheath, and that PLP1 mutations are known to cause PMD with overlapping disease phenotypes to those described in association with the new TMEM106B mutation, it is tempting to speculate that mutant TMEM106B could potentially interfere with the highly regulated endocytosis and/or exocytosis of PLP1, thereby affecting its spatial and temporal expression (Saher and Stumpf, 2015). PLP1 is synthesized in oligodendrocytes in the rough endoplasmic reticulum (ER) and then transported to the Golgi and plasma membrane in lipid raft-like membrane domains, where it is integrated into the developing myelin sheet. In the absence of neuronal signals, PLP1 is internalized and stored in late endosomes and lysosomes from where it can be rapidly recruited to the sites of membrane growth when needed (Feldmann et al., 2011). In PMD, point mutations in PLP1 interfere with its trafficking, resulting in accumulation of PLP1 within the ER/Golgi. By contrast, overexpression of PLP1 due to duplications leads to excessive Glossary Hypomyelinating leukodystrophies (HLD): Genetically determined white matter diseases caused by a primary deficit in myelin deposition. Multiple HLD genes have been identified (Fig. 1). TMEM106B: Type I transmembrane protein mainly localized to late endosomes and lysosomes. Common variants at the TMEM106B locus have been implicated in frontotemporal dementia with TDP-43 pathology. Regardless of the specific mechanism associated with the recurrent TMEM106B mutation, the addition of TMEM106B to the list of known HLD genes reinforces the connection between lysosomes and myelination. Currently available data further suggest that TMEM106B levels are tightly regulated and that either too much or too little TMEM106B may have devastating consequences. Future mechanistic studies of this newly discovered p.Asp252Asn mutation will undoubtedly provide much-needed insights into the normal function of TMEM106B within lysosomes. This would appear to be the critical next step towards the development of therapies or disease-modifying treatments not only for HLDs but also for patients with FTLD-TDP with and without GRN mutations. X.Z. is supported by a postdoctoral fellowship from The Bluefield Project to Cure Frontotemporal Dementia. R.R. is funded by NIH grants R35 NS097261, UG3/UH3 NS0103870 P50 AG016574 and P01 NS084974 and the Consortium for Frontotemporal Dementia (CFR).

https://doi.org/10.1093/brain/awx318
Neurology International · 2009 · 0 citations · open access

The interplay between the expression and functions of Wnt13 isoforms during apoptosis in bovine aortic endothelial cells

AbstractHypomyelinating leukodystrophies (HLDs) represent a group of congenital rare diseases for which the responsible genes have been identified in recent studies. In this review, we briefly describe the genetic/molecular mechanisms underlying the pathogenesis of HLD and the normal cellular functions of the related genes and proteins. An increasing number of studies have reported genetic mutations that cause protein misfolding, protein dysfunction, and/or mislocalization associated with HLD. Insight into the mechanisms of these pathways can provide new findings for the clinical treatments of HLD.

https://doi.org/10.3390/neurolint15030072
Journal of Medical Genetics · 2024 · 0 citations

Heterozygous de novo variants in <i>HSPD1</i> cause hypomyelinating leukodystrophy through impaired HSP60 oligomerisation

AbstractIntroduction Hypomyelinating leukodystrophies are a group of genetic disorders, characterised by severe permanent myelin deficiency. Their clinical features include developmental delay with or without neuroregression, nystagmus, central hypotonia, progressing to spasticity and ataxia. HSPD1 encodes the HSP60 chaperonin protein, mediating ATP-dependent folding of imported proteins in the mitochondrial matrix. Pathogenic variants in HSPD1 have been related to a number of neurological phenotypes, including the dominantly inherited pure hereditary spastic paraplegia (MIM 605280) and the recessively inherited hypomyelinating leukodystrophy 4 (MIM 612233). Subsequently, an additional phenotype of hypomyelinating leukodystrophy has been reported due to de novo heterozygous HSPD1 variants. In the current work, we expand the clinical and genetic spectrum of this hypomyelinating disorder by describing a cohort of three patients, being heterozygous for HSPD1 variants involving residue Ala536 of HSP60 (the novel p.Ala536Pro variant and the previously reported p.Ala536Val). Methods Clinical and radiological evaluation; whole exome sequencing, in vitro reconstitution assay and patient fibroblast cell lysate analysis. Results Clinical manifestation was of early-onset nystagmus, tremor and hypotonia evolving into spasticity and ataxia and childhood-onset neuroregression in one case. Brain MRI studies revealed diffuse hypomyelination. The 3D protein structure showed these variants to lie in spatial proximity to the previously reported Leu47Val variant, associated with a similar clinical phenotype. In vitro reconstitution assay and patient fibroblast cell lysate analysis demonstrated that these mutants display aberrant chaperonin protein complex assembly. Discussion We provide evidence that impaired oligomerisation of the chaperonin complex might underlie this HSPD1-related phenotype, possibly through exerting a dominant negative effect.

https://doi.org/10.1136/jmg-2024-109862

Disease module: DeepOracle (Open Targets). Structures: RDKit from PubChem SMILES. Literature: retrieved by DeepSearch across 234,678,978 indexed works (targeted per-candidate search), resolved on OpenAlex.

DeCure is a research and publication project, not medical advice and not a treatment. "DeCure for X" describes a research goal, not a claim that a cure exists. Backing a cure is a contribution to fund the research — it is not an investment, and confers no yield, royalty, equity or IP ownership. Papers are published open-access by the DeCure.ai DAO.