Rare & Orphan Lab · DeCure for X

DeCure for Citrullinemia

DeCure's autonomous Rare AI scientist is researching a drug-repurposing hypothesis for citrullinemia — screening already-approved drugs against its 2-gene Open Targets disease module to publish open-access research. Research is fast; the path to publication is funded in milestone stages.

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The disease map

Disease moduleCitrullinemia maps to a 2-gene Open Targets module — the target space DeCure's AI scientist screens approved drugs against.
DeCure.ai methodSignature reversal (LINCS) plus network proximity (STRING) rank already-approved drugs likely to perturb this module — the same engine that produces DeCure.ai's repurposing hypotheses.
Repurposing thesisScreening approved medicines against this disease module, then publishing the evidence for the strongest candidate. Known pharmacology and human exposure data make the first question sharper — they do not establish safety or efficacy in a new indication.

Research record

01
ResearchComing soon
Candidate research + dossier — target rationale, drug-repurposing thesis and evidence pack.proof: Published dossier + on-chain hash
02
ValidationComing soon
In-vitro biological validation at a contract research org (CRO).proof: CRO contract + in-vitro report
03
Peer review & paperComing soon
Peer-reviewed paper published open-access (preprint + journal).proof: DOI + open-access link + on-chain hash

Current lead

No approved-drug candidate for citrullinemia is corroborated in the literature DeepSearch retrieved. Some conditions are managed with non-pharmacological care — a device, surgery or physical therapy — rather than a medicine; that may be the case here, or the literature we found may simply be too sparse yet to support a drug-repurposing angle.

Molecular view

argininosuccinate synthase 1 (ASS1)ASS1 is one of the genes genetically linked to this disease in Open Targets — shown as context, not as a drug target we're pursuing: no approved-drug candidate for this disease is yet corroborated in the literature we found.

Loading structure…
helix sheet aspdrag to rotate · scroll to zoom

RCSB Protein Data Bank · entry 2NZ2 · 2.4 Å · ligand ASPARTIC ACID (ASP). Experimental structure, not a prediction.

What the evidence adds up to

A 60-year-old woman with type II citrullinemia received a living related partial liver transplant; over a 13-month follow-up her condition remained fairly good. The mean survival after symptom onset for this disease had been reported as 26.4 months, and most conservative treatments were described as not effective. In a separate case, a 16-year-old boy with type II citrullinemia received a left lobe graft from his heterozygous father; immediate postoperative hyperammonemia occurred, possibly related to small graft size, but donor and recipient serum citrulline and arginine were normal 20 days after transplant. A 6-year-old girl with classic citrullinemia received a left lateral segment graft from her heterozygous mother, whose liver had argininosuccinate synthetase activity at 20% of normal; 18 months after surgery the recipient’s plasma and urinary citrulline levels remained 10 and 50 times normal, respectively. The clinical significance of that mild elevation was unclear.

A review of living-related liver transplantation for metabolic disease noted that using heterozygous donors is incompletely tested. Short-term results may be encouraging, but long-term effects in both donor and recipient are not clearly known, and there may be penalties 10, 15, or 20 years later. In one reported case, a recipient of a liver from a cadaver donor with a strong family history of ornithine transcarbamylase deficiency died of hyperammonemic coma six days after transplant. In contrast, successful living-donor transplantation from an asymptomatic carrier of ornithine transcarbamylase deficiency has also been reported. The review emphasised that each case must be approached individually with a thorough understanding of the particular genetic and metabolic defect.

A 2016 review of citrin deficiency, which causes type II citrullinemia, stated that without therapy cases may progress to liver failure, and individuals may also suffer recurrent pancreatitis. Treatment for citrin deficiency requires a high protein, low carbohydrate diet, and acute hyperammonemia responds to arginine therapy. Sodium pyruvate has been reported to provide benefit. Liver transplant fully corrects the type II citrullinemia phenotype. An estimated 60,000–80,000 individuals have citrin deficiency in China alone.

A 2021 review of pregnancy-related citrullinemia type 1 identified only 14 reported cases since 1980, with onset during pregnancy or puerperium. The diagnosis and management process was described as very challenging. A 2014 case report described a 3.5-year-old boy with citrullinemia who had an uneventful four-hour dentistry procedure under anaesthesia but experienced delayed recovery and a 10-day hospital admission. The authors concluded that general anaesthesia and surgery can be a risk factor for exacerbating the disease course. A 2015 study of 20 critically ill patients found that plasma citrulline concentration was reduced compared with 15 controls, but found no correlation with glucose absorption, highlighting uncertainty about citrulline as a biomarker for small bowel function. What remains missing are long-term outcome data for heterozygous donor transplants beyond a few years, prospective studies of anaesthetic protocols in citrullinemia, and any controlled trial of sodium pyruvate or dietary interventions for citrin deficiency.

Evidence

Retrieved by DeepSearch across 234,678,978 indexed works and resolved on OpenAlex — ranked by citations, including the results that did not work.

Internal Medicine · 2000 · 27 citations · open access

Type II Citrullinemia in an Elderly Patient Treated with Living Related Partial Liver Transplantation.

AbstractA 60-year-old woman was admitted to our hospital for repeated consciousness disturbance. Blood examination showed hyperammonemia, and plasma amino acid analysis revealed a marked increase in the citrulline level. To establish a diagnosis, a percutaneous needle biopsy of the liver was performed. The determination of the urea cycle enzyme activities revealed a selective marked decrease in argininosuccinate synthetase activity, indicating the final diagnosis of type II citrullinemia. The mean survival period of this disease after the appearance of symptoms has been reported as 26.4 months, and most conservative treatments are not effective. We performed a living related partial liver transplantation. Over the subsequent 13-month follow-up, the patient's condition has remained fairly good.

https://doi.org/10.2169/internalmedicine.39.553
Critical Care · 2015 · 17 citations · open access

Plasma citrulline in the critically ill: intriguing biomarker, cautious interpretation

AbstractIn a recent issue of Critical Care, Poole and colleagues found that plasma citrulline concentration and glucose absorption were reduced in 20 critically ill patients compared with 15 controls; however, the authors found no correlation between these two variables. This study highlights the question of the accuracy of plasma citrulline for assessing small bowel function in critically ill patients. Future studies should take into account the type of intestinal failure considered, the particular metabolism of citrulline, the time of plasma citrulline measurement, as well as the range of citrullinemia considered.

https://doi.org/10.1186/s13054-015-0881-1
Journal of Pediatric Gastroenterology and Nutrition · 2001 · 13 citations

Living-Related Liver Transplantation in Inherited Metabolic Liver Disease: Feasibility and Cautions

AbstractLiving-Related Liver Transplantation for Type II Citrullinemia Using A Graft From Heterozygote Donor. Kasahara M, Ohwada S, Takeichi T, Kaneko H, Tomohasa T, Morikawa A, Yonemura K, Asonuma K, Tanaka K, Kobayashi K, Saheki T, Takeyoshi I, Morishita Y.Transplantation 2001;71(1):157–9. Summary: This article describes a 16-year-old boy with type II citrullinemia successfully treated with liver transplantation using a left lobe graft from his father, who was genetically proven to be heterozygous for the same disease. Immediate postoperative hyperammonemia was seen in the recipient and may have been related to the small size of the graft, relative to the recipient. The donor's postoperative course was unremarkable, and serum citrulline and arginine concentrations of the donor and the recipient were normal 20 days after transplantation. Department of Surgery Department of Pediatrics Recanati/Miller Transplantation Institute Mount Sinai School of Medicine New York, New York, U.S.A. A Pediatric Patient With Classic Citrullinemia Who Underwent Living-Related Partial Liver Transplantation. Ban K, Sugiyama N, Sugiyama K, Wada Y, Suzuki T, Hashimoto T, Kobayashi K.Transplantation 2001;71(10):1495–7. Summary: This article describes a 6-year-old girl with classic citrullinemia successfully treated with liver transplantation using a left lateral segment graft from her mother, who was genetically proven to be heterozygous for the same disease. Argininosuccinate synthetase levels in the donor liver were 20% of normal. Eighteen months after surgery, the recipient's plasma and urinary citrulline levels were 10 and 50 times the normal levels, respectively Comment: The advent of live liver donation in 1989 has permitted many children to undergo liver transplantation in a more timely fashion, before having irreversible complications of their diseases. The use of living (usually related) donors for pediatric patients with end-stage liver failure has been widely accepted and successful. In the setting of metabolic disease, however, unique and important questions must be raised when contemplating the donor candidacy of a parent, who may be a heterozygous carrier of the genetic defect. First, will the heterozygous liver correct the underlying metabolic disorder? Second, what are the immediate risks to the donor that are related to dedifferentiation of his or her own liver as it undergoes regeneration? Third, what are the long-term risks to both the donor and the recipient who each have a heterozygous liver? The answers to these questions are not obvious. However, recent clinical experiences, including these two reports from Transplantation, shed light on possible answers. The initial assumption is that a heterozygous liver should improve the manifestations of metabolic disorders. This assumption is based on the presumption that the heterozygous liver has approximately 50% of the native enzyme activity and that this will be sufficient for normal metabolic activity. The fact that the heterozygous carrier is unaffected by the metabolic disorder is used as the basis for this presumption. It is of great interest that in the second case report of classic citrullinemia (Transplantation 2001;71:1495), argininocuccinate synthetase activity in the genetically proven heterozygote was only 20% of normal levels. Fortunately, this level of activity was adequate in the short-term for the recipient, even though posttransplantation plasma and urinary citrulline levels remained 10 and 50 times the normal, respectively. The clinical significance of the mild elevation of plasma citrulline in the recipient is unclear. Many of the enzymes affected in metabolic diseases are expressed not just in liver, but also in other tissues. For example, fumaryl acetoacetate hydrolase is expressed in both the liver and the kidney, whereas ornithine transcarbamylase (OTC) is expressed in the liver and the intestine. Therefore, liver replacement may not restore total body enzyme activity even to 50% of normal. This failure to restore 50% of normal total body activity through liver transplantation has potential adverse clinical implications. For instance, injury of the donated liver during acute rejection episodes may lead to further enzymatic insufficiency and possible recurrence of the primary metabolic disease in the recipient. We have had the opportunity to observe a child who underwent living-related (mother) transplantation for tyrosinemia. Comprehensive metabolic studies in this patient posttransplantation have not revealed evidence of deficiency in fumaryl acetoacetate hydrolase activity. In contrast, in a recently reported case, the recipient of a liver from a cadaver donor with a strong family history of OTC deficiency, died of hyperammonemic coma 6 days after undergoing transplantation (N Engl J Med 1999;341:921). The question rose after this transplant whether the donor was a heterozygote for OTC deficiency. Another recent case report, however, notes the successful living-donor transplantation from an asymptomatic carrier of OTC (J Pediatr 2001;138:432). Citrullinemia is an autosomal recessive disorder resulting in deficiency of the urea cycle enzyme, argininosuccinate synthetase, which is mainly found in the liver. Classic disease is the result of a defect in argininosuccinate synthetase, whereas type II disease is related to a defect in a putative mitochondrial carrier protein. Liver transplantation is curative and related living donors have been used; but, in previous reports, the donor carrier status has not been documented (Intern Med 2000;39:553;Rinsho Shinkeigaku 1999;39:1049). The lack of acceptance of cadaver donation in Japan has limited liver transplantation to living donors. In the current two articles from Japan, donor-and recipient-related issues both have been carefully evaluated. In particular, donor heterozygosity was assessed at both a molecular and an enzymatic level. In addition, donor and recipient biochemistries were carefully assessed postoperatively. Special considerations must be taken into account when considering living-related donor transplantation for certain genetic disorders. Alagille syndrome, which involves a paucity of bile ducts, is an excellent example. In our own center, a transplant procedure was aborted during surgery when the left lateral segment of the donor liver was divided and it was found that there were no reconstructible bile ducts as a result of subclinical Alagille syndrome in an otherwise healthy and asymptomatic heterozygotic donor (Transplantation 1999;67:416). Clearly, certain genetic disorders may be subclinical despite significant underlying abnormalities. α1-Antitrypsin deficiency is another example in which special considerations are in order. Controversy remains as to whether protease inhibitor MZ individuals are at increased risk for liver disease (Hepatology 1998;28:1058). As such, it has been our policy to perform percutaneous liver biopsy as part of routine assessment of known MZ donors. To date, we have not observed any significant liver injury in these individuals. An even more important issue in the use of heterozygous living donors is the potential risk to the donor. In living-donor liver transplantation, donor safety must remain paramount. It is well known that the liver regenerates after partial resection. The mechanism of regeneration involves hepatocyte replication. This process requires dedifferentiation of the hepatocytes, with a potential loss of tertiary hepatocyte functions (Gastroenterology 1999;117:1408). Hyperbilirubinemia and coagulopathy associated with small graft size or as observed after right lobectomy are presumed to be manifestations of this process (J Am Coll Surg 2001:192:510). Therefore, heterozygous liver donors are potentially at risk for transient enzymatic insufficiency. In the case of classic citrullinemia described in the second case report, a left lateral segment was used. Because this represented less than 25% of the donor's total liver mass, it is not surprising that there was no evidence of transient clinical citrullinemia despite the donor's low enzyme activity. In the case of type II citrullinemia, a left lobe was used, but the baseline enzymatic activity of the donor was closer to normal. It is unknown whether PiMZ liver donors will be at increased risk for the development of liver disease. It is of note that late symptomatic OTC deficiency has been described in long-term carriers of this disease (Clin Genet 2001;59:111). In summary, living-donor liver transplantation using heterozygous donors in the setting of metabolic disease is an incompletely tested therapy. Although technically feasible, caution is imperative. Short-term results may be encouraging, but enthusiasm must be guarded, because long-term effects, in both the donor and the recipient, are not clearly known. There may be heavy penalties to pay 10, 15, or 20 years down the road for both donor and recipient. We must ensure that potential donors understand these issues and accept these risks. Additionally, each case must be approached individually with a thorough understanding of the particular genetic and metabolic defect.

https://doi.org/10.1097/00005176-200110000-00023
Anesthesiology and Pain Medicine · 2014 · 8 citations · open access

Anesthetic Management in a Child With Citrullinemia: A Case Report

AbstractINTRODUCTION: Citrullinemia is a defect in the urea cycle that causes ammonia to accumulate in the blood. We describe the anesthetic management of a patient with citrullinemia, who experienced an unexpected 10 day hospital admission. CASE PRESENTATION: We anesthetized a 3.5 year-old boy with citrullinemia who was scheduled for a dentistry procedure. Perioperative precautions included minimizing fasting period, hypothermia prevention, relieving anxiety and pain, perioperative infusion of D10W and benzoate sodium, as well as a pediatric endocrinology consultation. The operation lasted 4 hours and its course was uneventful. He had a delayed recovery from anesthesia and was discharged from hospital after 10 days. CONCLUSIONS: General anesthesia and surgery can be a risk factor for exacerbating the course of the disease in patients with citrullinemia. It appears that administering short acting sedatives and analgesics in these patients would be of more benefit. Further studies are required to identify a safe method for anesthesia in citrullinemia.

https://doi.org/10.5812/aapm.21791
Oxford University Press eBooks · 2016 · 0 citations

Citrin Deficiency

AbstractCitrin deficiency is an inborn error of metabolism that appears to affect both the urea cycle and energy generation. Worldwide, citrin deficiency is likely one of the commonest inborn errors of metabolism, 60,000–80,000 individuals are estimated to have citrin deficiency in China alone. Children typically present with an abnormal newborn screen or neonatal intrahepatic cholestasis with citrin deficiency (NICCD). Adults typically present clinically with neuropsychiatric symptoms, hepatic dysfunction and hyperammonemia. As plasma amino acids typically show an elevated citrulline at the time of crisis, this presentation is known as citrullinemia type II (CTLN2). Without therapy, cases may progress to liver failure. Individuals may also suffer recurrent pancreatitis. In contrast to other urea cycle defects, the treatment for citrin deficiency requires a high protein, low carbohydrate diet. Acute hyperammonemia responds to arginine therapy. Sodium pyruvate has been reported to provide benefit. In addition many cases will require restriction of galactose. Liver transplant fully corrects the CTLN2 phenotype.

https://doi.org/10.1093/med/9780199972135.003.0018
Research Square · 2021 · 0 citations · open access

Pregnancy-related Type Citrullinemia Type 1: an Analysis of 14 Cases and Review of the Literature

AbstractAbstract Citrullinemia type 1 (CTLN1) is a rare autosomal recessive urea cycle disorder, without functional argininosuccinate synthase (ASS) enzyme, mostly occurring in newborns and infants, but it has been reported having an adult-onset in carriers of the pathogenic gene, and even more rarely, the onset of the disease is pregnancy related. The diagnosis and management process of pregnancy-related type citrullinemia 1 was found very challenging in the clinical practice. Citrullinemia type 1 was, often seen in newborns with a worldwide prevalence of 1:44,300-250,000, characterized by hyperammonemia and elevated citrulline levels in blood and urine as clinical features. Since 1980, only 14 cases with onset during pregnancy and puerperium have been reported. This review provides an overview of the relationship between Citrullinemia type 1 and pregnancy and discusses the mechanisms, clinical manifestations and genetic characteristics of pregnancy-related onset.

https://doi.org/10.21203/rs.3.rs-1162222/v1

Disease module: DeepOracle (Open Targets). Structures: RDKit from PubChem SMILES. Literature: retrieved by DeepSearch across 234,678,978 indexed works (targeted per-candidate search), resolved on OpenAlex.

DeCure is a research and publication project, not medical advice and not a treatment. "DeCure for X" describes a research goal, not a claim that a cure exists. Backing a cure is a contribution to fund the research — it is not an investment, and confers no yield, royalty, equity or IP ownership. Papers are published open-access by the DeCure.ai DAO.