Rare & Orphan Lab · DeCure for X

DeCure for Brain compression

DeCure's autonomous Rare AI scientist is researching a drug-repurposing hypothesis for brain compression — screening already-approved drugs against its 37-gene Open Targets disease module to publish open-access research. Research is fast; the path to publication is funded in milestone stages.

Disease module37 genesLead labRare & Orphan
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Rare & OrphanDOID:11457$DeCureRare

The disease map

Disease moduleBrain compression maps to a 37-gene Open Targets module — the target space DeCure's AI scientist screens approved drugs against.
DeCure.ai methodSignature reversal (LINCS) plus network proximity (STRING) rank already-approved drugs likely to perturb this module — the same engine that produces DeCure.ai's repurposing hypotheses.
Repurposing thesisScreening approved medicines against this disease module, then publishing the evidence for the strongest candidate. Known pharmacology and human exposure data make the first question sharper — they do not establish safety or efficacy in a new indication.

Research record

01
ResearchComing soon
Candidate research + dossier — target rationale, drug-repurposing thesis and evidence pack.proof: Published dossier + on-chain hash
02
ValidationComing soon
In-vitro biological validation at a contract research org (CRO).proof: CRO contract + in-vitro report
03
Peer review & paperComing soon
Peer-reviewed paper published open-access (preprint + journal).proof: DOI + open-access link + on-chain hash

Current lead

No approved-drug candidate for brain compression is corroborated in the literature DeepSearch retrieved. Some conditions are managed with non-pharmacological care — a device, surgery or physical therapy — rather than a medicine; that may be the case here, or the literature we found may simply be too sparse yet to support a drug-repurposing angle.

Molecular view

uridine-cytidine kinase 2 (UCK2)UCK2 is one of the genes genetically linked to this disease in Open Targets — shown as context, not as a drug target we're pursuing: no approved-drug candidate for this disease is yet corroborated in the literature we found.

Loading structure…
helix sheet c5pdrag to rotate · scroll to zoom

RCSB Protein Data Bank · entry 1XRJ · 2.0 Å · ligand CYTIDINE-5'-MONOPHOSPHATE (C5P). Experimental structure, not a prediction.

What the evidence adds up to

Decompressive craniectomy is the only intervention with repeated clinical support for life-threatening brain compression, but the evidence base is narrow and its limitations are explicit. A 2011 review notes that medical therapy can mitigate intracranial pressure rises but that surgery is reserved for when hypertension becomes life-threatening; a 2007 review of decompressive surgery for space-occupying hemispheric infarction states that most reports are retrospective with low patient numbers, that control groups in prospective trials had higher age and more co-morbidities, and that long-term outcome data are insufficient. Preliminary randomised trial data reported in 2006 were described as very positive, but the same review calls the treatment promising rather than proven. A 2018 report on 371 patients with traumatic brain compression describes differentiated operative indications and analysed outcomes for intracranial haematomas and depressed fractures, but gives no survival or functional numbers in the abstract.

Experimental work on the mechanism of compression injury points to a specific molecular pathway but has not reached clinical translation. A 2000 study using organotypic brain slice cultures subjected to dynamic mechanical stretch found differential regulation of 22 genes related to cell death and survival: 24 hours after stretch, BDNF, NGF and TrkA expression increased significantly, while bcl-2, CREB and GAD65 decreased (p < 0.05); CREB and GAD65 expression correlated negatively with strain, and APP695 negatively with strain rate. A 2021 study in primary cortical neurons and a rat traumatic intracranial hypertension model found that controlled decompression (CDC) for 2–3 hours in vitro and 20–30 minutes in vivo attenuated compressive injury, reduced neuronal necroptosis and neuroinflammation, and increased activity of the two-pore domain potassium channel TREK-1; the TREK-1 blockers spadin and SID1900 partially reversed these protective effects. Compression alone aggravated injury, and CDC had no effect on RIP1 activity while reducing RIP3 activation.

The historical record shows how little has changed in the core question. Papers from 1894 and 1895, undertaken at the suggestion of Professor Horsley, investigated the elasticity of the living brain and recovery after short periods of compression, motivated by the frequency of brain compression as a pathological condition. That question — what mechanical parameters determine reversible versus irreversible injury — remains unresolved. The 2000 study explicitly found that gene expression responses were sensitive to both magnitude and rate of mechanical stimulus, and that specific genes correlated with strain or strain rate, but no clinical trial has used such parameters to stratify patients.

What is missing is not another mechanism paper. The 2021 TREK-1 work is preclinical and used pharmacological blockers in rodents; no human data exist for spadin or SID1900. The 2007 review identifies the decisive gaps: prospective randomised trials with adequate control groups, long-term functional outcome measures, and age-stratified analysis. The 2011 review similarly notes that despite a century of decompressive surgery, the procedure remains a rescue manoeuvre rather than a targeted therapy. No drug has been shown in any human trial to modify the molecular response to brain compression, and no trial has tested whether controlled decompression protocols alter outcomes in patients. Funding for a properly powered randomised surgical trial with blinded outcome assessment, and for translational work linking the in vitro strain-rate findings to patient imaging or pressure monitoring, is the immediate need.

Evidence

Retrieved by DeepSearch across 234,678,978 indexed works and resolved on OpenAlex — ranked by citations, including the results that did not work.

New England Journal of Medicine · 2011 · 70 citations

Clinical Value of Decompressive Craniectomy

AbstractPatients with a variety of intracranial disorders — including traumatic brain injury, stroke, subarachnoid hemorrhage, intracerebral hemorrhage, and brain tumors — often present with a progressive increase in intracranial pressure, leading to clinical deterioration and ultimately to death. Medical therapy1 can help to mitigate such increases in pressure, but despite the use of the best available measures, intracranial hypertension becomes life-threatening in some patients. More than a century ago, it was suggested that it might be beneficial to “decompress the brain by widely opening the skull to decrease the pressure”2 in patients with severe traumatic brain injury. This procedure, called . . .

https://doi.org/10.1056/nejme1102998
Journal of Biomechanical Engineering · 2000 · 69 citations

Dynamic Mechanical Stretch of Organotypic Brain Slice Cultures Induces Differential Genomic Expression: Relationship to Mechanical Parameters

AbstractAlthough the material properties of biological tissues are reasonably well established, recent studies have suggested that the biological response of brain tissue and its constituent cells may also be viscoelastic and sensitive to both the magnitude and rate of a mechanical stimulus. Given the potential involvement of changes in gene expression in the pathogenic sequelae after head trauma, we analyzed the expression of 22 genes related to cell death and survival and found that a number of these genes were differentially regulated after mechanical stretch of an organotypic brain slice culture. Twenty-four hours after stretch, the expression of BDNF, NGF, and TrkA was significantly increased, whereas that of bcl-2, CREB, and GAD65 was significantly decreased (MANOVA followed by ANOVA, p < 0.05). Expression of CREB and GAD65 was negatively correlated with strain, whereas expression of APP695 was negatively correlated with strain rate (all p < 0.05). This study demonstrates that a subset of genes involved in cell death and survival are differentially regulated after dynamic stretch in vitro and that the expression of specific genes is correlated with mechanical parameters of that stretch.

https://doi.org/10.1115/1.429650
Current Opinion in Internal Medicine · 2007 · 24 citations

The role of surgery in ischemic stroke: decompressive surgery

AbstractPURPOSE OF REVIEW: This review gives an integrated view on the current status of decompressive surgery in space-occupying hemispheric brain infarction with a focus on new developments based on the available data of recent clinical trials, also including preliminary data from randomized trials reported at international stroke conferences in 2006. RECENT FINDINGS: The treatment of ischemic brain infarction with life-threatening space-occupying edema is, because of a lack of prospective studies, one of the major controversial issues within neurocritical care medicine today. Only a few years ago, massive cerebral infarctions were regarded an untreatable disease with fatal outcome. The introduction of decompressive surgery (hemicraniectomy) has completely changed this point of view. Most of the reports, however, are retrospective with low numbers of patients. There are only few prospective trials that suggest a substantial benefit of decompressive surgery to significantly reduce mortality as compared to maximal conservative treatment alone. The control groups in these studies, however, consist of patients with higher age and higher rates of co-morbidities. Also, in most studies information on long-term outcome is insufficient. In 2006 long expected preliminary data from randomized trials of hemicraniectomy have been reported at international stroke conferences. They yield very positive results. SUMMARY: Decompressive surgery appears to be a promising treatment option for patients with space-occupying hemispheric brain infarction.

https://doi.org/10.1097/mcc.0b013e3280a9e5ae
Oxidative Medicine and Cellular Longevity · 2021 · 12 citations · open access

Controlled Decompression Attenuates Compressive Injury following Traumatic Brain Injury via TREK‐1‐Mediated Inhibition of Necroptosis and Neuroinflammation

AbstractDecompressive craniectomy is an effective strategy to reduce intracranial hypertension after traumatic brain injury (TBI), but it is related to many postoperative complications, such as delayed intracranial hematoma and diffuse brain swelling. Our previous studies have demonstrated that controlled decompression (CDC) surgery attenuates brain injury and reduces the rate of complications after TBI. Here, we investigated the potential molecular mechanisms of CDC in experimental models. The in vitro experiments were performed in a traumatic neuronal injury (TNI) model following compression treatment in primary cultured cortical neurons. We found that compression aggravates TNI‐induced neuronal injury, which was significantly attenuated by CDC for 2 h or 3 h. The results of immunocytochemistry showed that CDC reduced neuronal necroptosis and activation of RIP3 induced by TNI and compression, with no effect on RIP1 activity. These protective effects were associated with decreased levels of inflammatory cytokines and preserved intracellular Ca 2+ homeostasis. In addition, the expression of the two‐pore domain K + channel TREK‐1 and its activity was increased by compression and prolonged by CDC. Treatment with the TREK‐1 blockers, spadin or SID1900, could partially prevent the effects of CDC on intracellular Ca 2+ metabolism, necroptosis, and neuronal injury following TNI and compression. Using a traumatic intracranial hypertension model in rats, we found that CDC for 20 min or 30 min was effective in alleviating brain edema and locomotor impairment in vivo. CDC significantly inhibited neuronal necroptosis and neuroinflammation and increased TREK‐1 activation, and the CDC‐induced protection in vivo was attenuated by spadin and SID1900. In summary, CDC is effective in alleviating compressive neuronal injury both in vitro and in vivo, which is associated with the TREK‐1‐mediated attenuation of intracellular Ca 2+ overload, neuronal necroptosis, and neuroinflammation.

https://doi.org/10.1155/2021/4280951
DOAJ (DOAJ: Directory of Open Access Journals) · 2018 · 5 citations · open access

SYNDROME OF BRAIN COMPRESSION IN CRANIO-CEREBRAL TRAUMA

AbstractThe work presents the data of complex clinical investigation and treatment of 371 patients with the syndrome of brain compression of traumatic etiology. Valid indications for using differentiated operative interventions have been developed and results of treatment of patients with intracranial hematomas, depressed fractures of the cranial bones inducing the symptoms of brain compression have been analyzed.

https://doi.org/10.24884/0042-4625-2012-171-6-066-068
Proceedings of the Royal Society of London · 1895 · 3 citations

A research into the elasticity of the living brain and the conditions governing the recovery of the brain after compression for short periods

AbstractAbstract 1. Introduction.—This piece of work was undertaken at the suggestion of Professor V. Horsley, who devised the apparatus employed, and to whom I am indebted for advice and suggestions. In view of the great frequency of compression of the brain as a pathological condition, it seems very advisable to attempt to obtain knowledge of some of the elementary factors conditioning the physical changes in the brain substance due to mechanical pressure.

https://doi.org/10.1098/rspl.1895.0001
Proceedings of the Royal Society of London · 1894 · 2 citations

VI. A research into the elasticity of the living brain, and the conditions governing the recovery of the brain after compression for short periods

AbstractAbstract (Towards the expenses of this research a grant was made by the British Medical Association at the recommendation of the. Scientific Grants Committee.) In view of the great frequency of compression of the brain as a pathological condition, it seems very advisable to attempt to obtain some knowledge of the elementary factors conditioning the physical changes in the brain substance due to mechanical pressure.

https://doi.org/10.1098/rspl.1894.0043

Disease module: DeepOracle (Open Targets). Structures: RDKit from PubChem SMILES. Literature: retrieved by DeepSearch across 234,678,978 indexed works using Disease Ontology synonyms, resolved on OpenAlex.

DeCure is a research and publication project, not medical advice and not a treatment. "DeCure for X" describes a research goal, not a claim that a cure exists. Backing a cure is a contribution to fund the research — it is not an investment, and confers no yield, royalty, equity or IP ownership. Papers are published open-access by the DeCure.ai DAO.