DeCure's autonomous Cancer AI scientist is researching a drug-repurposing hypothesis for biliary tract neoplasm — screening already-approved drugs against its 25-gene Open Targets disease module to publish open-access research. Research is fast; the path to publication is funded in milestone stages.
Disease moduleBiliary tract neoplasm maps to a 25-gene Open Targets module — the target space DeCure's AI scientist screens approved drugs against.
DeCure.ai methodSignature reversal (LINCS) plus network proximity (STRING) rank already-approved drugs likely to perturb this module — the same engine that produces DeCure.ai's repurposing hypotheses.
Repurposing thesisScreening approved medicines against this disease module, then publishing the evidence for the strongest candidate. Known pharmacology and human exposure data make the first question sharper — they do not establish safety or efficacy in a new indication.
Research record
01
ResearchComing soon
Candidate research + dossier — target rationale, drug-repurposing thesis and evidence pack.proof: Published dossier + on-chain hash
02
ValidationComing soon
In-vitro biological validation at a contract research org (CRO).proof: CRO contract + in-vitro report
03
Peer review & paperComing soon
Peer-reviewed paper published open-access (preprint + journal).proof: DOI + open-access link + on-chain hash
Current lead
approvedGemcitabineApproved drug
Structures already discussed alongside biliary tract neoplasm in the retrieved literature, rendered from public PubChem SMILES. Which drugs appear here reflects the evidence found, not a ranked prediction.
Molecular view
C4S dCK variant of dCK — Gemcitabine has a real, experimentally solved structure in complex with this target (PDB 2NO0, 1.8 Å). This is the drug's own deposited structure, not a prediction, and confirms it is a structurally characterised molecule rather than an untested guess.
Loading structure…
helix sheet geodrag to rotate · scroll to zoom
RCSB Protein Data Bank · entry 2NO0 · 1.8 Å · ligand Gemcitabine (GEO). Experimental structure, not a prediction.
What the evidence adds up to
Biliary tract neoplasm is described as one of the most aggressive malignancies with a very poor prognosis. Most cancers have grown beyond the limits of curative resection by the time they become clinically evident. Only one third of patients can undergo radical surgery; the remainder present with unresectable, locally advanced, or metastatic disease. Among the drugs tested, gemcitabine has the best efficacy-toxicity ratio, but efficacy results remain disappointing. The combination of gemcitabine and cisplatin significantly prolongs survival and is the standard treatment for locally advanced or metastatic biliary tract cancer. The gemcitabine-oxaliplatin combination is described as one of the most promising schedules.
A retrospective analysis of 186 consecutive patients with unresectable biliary tract cancer treated with chemotherapy between 2000 and 2009 at five Japanese institutions found that prognosis has improved recently. Patients were divided into three groups by treatment era: Group A (2000–2003), Group B (2004–2006), and Group C (2007–2009). In Group A, 5-fluorouracil-based chemotherapies were primarily selected as first-line, and only 24% received second-line chemotherapy. In Group B, gemcitabine or S-1 monotherapy was mainly introduced as first-line, and 51% received second-line monotherapy. In Group C, combination therapy with gemcitabine and S-1 was mainly chosen as first-line, and 53% received second-line combination therapy. The median time to progression was 4.4 months in Group A, 3.5 months in Group B, and 5.9 months in Group C (P < 0.01). Median overall survival was 7.1 months, 7.3 months, and 11.7 months in Groups A, B, and C respectively (P = 0.03). Induction rates of all three drugs (gemcitabine, platinum analogs, and fluoropyrimidine) were 4%, 2%, and 27% across the groups (P < 0.01). The authors concluded that using three effective drugs may improve prognosis.
Advances in imaging over the five years prior to 2004 allowed for earlier diagnosis and better surgical planning. CT scan and ultrasound are the mainstay radiological modalities for staging biliary tract malignancy, assessing response to non-surgical treatment, detecting recurrence after resection, and follow-up. Palliative management of obstructive disease was improved with the advent of photodynamic therapy. Biological studies evaluating mutation-independent activation of the Hedgehog pathway have provided information on carcinogenesis and opportunities for future targeted therapies. A 2025 clinical case report describes the use of anti-HER2 therapy in a patient with advanced intrahepatic cholangiocarcinoma, using both standard cytostatics and modern targeted drugs.
What is still missing are large, prospective trials that can confirm whether the sequential or combination use of gemcitabine, platinum analogs, and fluoropyrimidine genuinely improves survival beyond the modest gains seen in retrospective data. Patient stratification by molecular markers such as Hedgehog pathway activation or HER2 status is not yet standard, and the rarity of the disease makes recruitment for such trials difficult. Funding for biomarker-driven studies and for randomised comparisons of targeted agents against standard chemotherapy remains insufficient.
Evidence
Retrieved by DeepSearch across 234,678,978 indexed works and resolved on OpenAlex — ranked by citations, including the results that did not work.
Japanese Journal of Clinical Oncology · 2005 · 72 citations · open access
Single-agent Gemcitabine in the Treatment of Advanced Biliary Tract Cancers: a Phase II Study
AbstractOBJECTIVE: Patients with advanced biliary tract cancers have a dismal prognosis. The aim of this study was to evaluate the efficacy and safety of gemcitabine as a single agent in the treatment of patients with unresectable biliary tract cancers. METHODS: From May 2002 to April 2004, 23 chemotherapy-naïve patients with locally advanced or metastatic biliary tract adenocarcinomas were enrolled. The median age was 59 years (range 37-76). Fifteen patients (65.2%) had cholangiocarcinomas and eight (34.8%) had gallbladder adenocarcinomas. Patients received gemcitabine 1000 mg/m(2) over 60 min once a week for 2 weeks followed by a week off therapy. Treatment was discontinued when unacceptable toxicities occurred or there was evidence of disease progression. RESULTS: A total of 110 cycles of chemotherapy were performed with a median of four cycles (range 1-10). The median follow-up was 13.4 months. Among the 23 patients, six (26.1%) had a partial response, eight (34.8%) had stable disease and nine (39.1%) had disease progression despite treatment. The overall response rate was 26.1% [95% confidence interval (CI) 22.08-30.12]. The median time to disease progression was 8.1 months (95% CI 3.33-12.87) and the median overall survival was 13.1 months (95% CI 1.64-24.56). Toxicities were generally mild and treatment was well tolerated. Of the 23 patients, one patient experienced a grade 3-4 neutropenia and one a grade 3-4 thrombocytopenia; however, no cases of febrile neutropenia or treatment-related deaths were noted. CONCLUSION: In this phase II trial, therapy with gemcitabine was well tolerated and clinically active in patients with locally advanced or metastatic biliary tract cancers.
AbstractPURPOSE OF REVIEW: Biliary tract neoplasm is one of the most aggressive malignancies, with a very poor prognosis. Most cancers of the biliary tract will have grown beyond the limits of curative resection by the time they become clinically evident. This reality has fostered therapeutic nihilism, and most physicians and surgeons, in their pessimism, have to run ambitious trials evaluating new diagnostic tools and therapeutic techniques in this disease. RECENT FINDINGS: Advances in imaging over the period of the last 5 years now allow for earlier diagnosis and better surgical planning. Recent improvements in operative technique have substantially improved the outlook of patients with this cancer. Palliative management of obstructive disease recently has been improved with the advent of photodynamic therapy. Among the different drugs tested in this disease, gemcitabine seems to have the best efficacy:toxicity ratio. However, efficacy results remain disappointing, and combination schedules need to be developed to improve the results. Among them, the gemcitabine-oxaliplatin combination seems to be one of the most promising schedules. Biological studies, especially those evaluating mutation-independent activation of the Hedgehog pathway, have provided interesting information on the carcinogenesis of this rare tumor. Furthermore, these results bring us the opportunity of development of future targeted therapies in biliary tract cancer. SUMMARY: Biliary tract neoplasm remains one of the most aggressive malignancies. However, as for other gastrointestinal malignancies, biological studies and diagnostic and therapeutic improvements have provided interesting results that could lead to a major improvement in the prognosis of this disease.
World Journal of Gastroenterology · 2013 · 14 citations · open access
Improvement of prognosis for unresectable biliary tract cancer
AbstractAIM: To evaluate the chemotherapeutic outcomes and confirm the recent improvement of prognosis for unresectable biliary tract cancer. METHODS: A total of 186 consecutive patients with unresectable biliary tract cancer, who had been treated with chemotherapy between 2000 and 2009 at five institutions in Japan, were retrospectively analyzed. These patients were divided into three groups based on the year beginning chemotherapy: Group A (2000-2003), Group B (2004-2006), and Group C (2007-2009). The data were fixed at the end of December 2011. Overall survival and time-to-progression were analyzed and compared chronologically. RESULTS: No patient characteristics were significantly different among the three groups. The gallbladder was involved in about half of the patients in each group, and metastatic biliary tract cancer was present in three quarters of the enrollees. In Group A, 5-fluorouracil-based chemotherapies were primarily selected as first-line chemotherapy, and only 24% were treated with second-line chemotherapy. In Group B, gemcitabine or S-1 monotherapy was mainly introduced as first-line chemotherapy, and 51% of the patients who were refractory to first-line chemotherapy were treated with second-line chemotherapy mainly with monotherapy. In Group C, the combination therapy with gemcitabine and S-1 was mainly chosen as first-line chemotherapy, and 53% of the patients refractory to first-line chemotherapy were treated with second-line chemotherapy mainly with combination therapy. The median time-to-progressions were 4.4 mo, 3.5 mo and 5.9 mo in Groups A, B and C, respectively (4.4 mo vs 3.5 mo vs 5.9 mo, P < 0.01). The median overall survivals were 7.1, 7.3, and 11.7 mo in Groups A, B and C (7.1 mo vs 7.3 mo vs 11.7 mo, P = 0.03). Induction rates of all three drugs (gemcitabine, platinum analogs, and fluoropyrimidine) in Groups A, B and C were 4%, 2% and 27% (4% vs 2% vs 27%, P < 0.01). CONCLUSION: The prognosis of unresectable biliary tract cancer has improved recently. Using three effective drugs (gemcitabine, platinum analogs, and fluoropyrimidine) may improve the prognosis of this cancer.
Is metallic stenting worthwhile for biliary obstruction due to lymph node metastases?
AbstractBACKGROUND: The indications for metallic stents have widened from primary hepatobiliary cancers to the other diseases such as lymph node metastases from distant organs. The present study aimed to evaluate the results and establish the efficacy of metallic stenting in patients with obstructive jaundice due to metastatic lymph nodes. METHODS: Stent patency, survival and cost per patient until death were retrospectively compared between patients with primary carcinoma of the biliary tract (PC group; n = 71) and lymph node metastases from the gastric and colorectal carcinomas. (LN group; n = 26). RESULTS: Stent occlusion occurred in 17 patients in the PC group (24%). In contrast, stent occlusion was significantly more frequent in the LN group (P = 0.0293), occurring in 13 patients (50%). Cumulative stent patency was also significantly shorter in the LN group than that in the PC group (P = 0.0016). However, survival was almost the same between the two groups. The mean medical fee was 27% higher for the LN group than for the PC group, which was attributable to additional treatment for stent occlusion. DISCUSSION: The indications for metallic stent placement for biliary obstruction caused by lymph node metastases from the gastrointestinal tract seem limited. Further investigation of the treatments alternative to metallic stents would be required.
PARIPEX-INDIAN JOURNAL OF RESEARCH · 2024 · 0 citations · open access
ROLE OF IMAGING IN EVALUATION OF BILIARY TRACT MALIGNANCY
AbstractAccurate staging of biliary tract neoplasm is helpful in improving the prognosis. CT scan and USG are main stay radiological modality for staging of biliary tract malignancy, to assess the response to nonsurgical treatment, to detect recurrence after resection of tumor and for follow up. Imaging provides crucial information for the appropriate management of these cancers.
Chemotherapies and molecularly targeted therapies in biliary tract cancers
AbstractBiliary tract cancer(BTC) is a malignart tumor which originates from biliary epithelia.Most patients with BTC present locally advanced stage or distant metastasis.Although the standard systemic chemotherapy approaches are emerging,the prognosis remains poor.Combination of gemcitabine and cisplatin can significantly prolong survival for patients,which is the standard treatment for locally advanced or metastatic BTC.Application of molecularly targeted therapies in advanced BTC is the new trend of clinical research.
Key words:
Biliary tract neoplasms; Targeted therapy
Medical alphabet · 2025 · 0 citations · open access
Own experience of using anti-HER2 therapy for cancer of the intrahepatic cholangiocarcinoma
AbstractCancer of the biliary tract is rare and one of the most aggressive malignancies. The main method of radical treatment is surgical. However, only 1/3 of patients can use this approach, while the rest of the patients have an unresectable, locally widespread or already metastatic process. The therapeutic tactic of this group of patients is systemic drug antitumor therapy. In this article, we present a description of a clinical case of effective treatment of a patient with advanced intrahepatic cholangiocarcinoma using not only standard cytostatics, but also modern targeted drugs.
AbstractMedical therapy is the primary choice for patients with advanced biliary tract cancer.Gemcitabine has been proved to be one of the most effective drugs and a standard regimen has been made when combined with cisplatin.Studies of the second line therapy is few.Targeted therapy has a potential to create a new era in the future but needs to be validated in large clinical trials.
Key words:
Biliary tract neoplasms; Drug therapy; Molecular targeted therapy
Disease module: DeepOracle (Open Targets). Structures: RDKit from PubChem SMILES. Literature: retrieved by DeepSearch across 234,678,978 indexed works (targeted per-candidate search), resolved on OpenAlex.
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