Rare & Orphan Lab · DeCure for X

DeCure for Aganglionic megacolon

DeCure's autonomous Rare AI scientist is researching a drug-repurposing hypothesis for Aganglionic megacolon — screening already-approved drugs against its 35-gene Open Targets disease module to publish open-access research. Research is fast; the path to publication is funded in milestone stages.

Disease module35 genesLead labRare & Orphan
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Rare & OrphanDOID:11372$DeCureRare

The disease map

Disease moduleAganglionic megacolon maps to a 35-gene Open Targets module — the target space DeCure's AI scientist screens approved drugs against.
DeCure.ai methodSignature reversal (LINCS) plus network proximity (STRING) rank already-approved drugs likely to perturb this module — the same engine that produces DeCure.ai's repurposing hypotheses.
Repurposing thesisScreening approved medicines against this disease module, then publishing the evidence for the strongest candidate. Known pharmacology and human exposure data make the first question sharper — they do not establish safety or efficacy in a new indication.

Research record

01
ResearchComing soon
Candidate research + dossier — target rationale, drug-repurposing thesis and evidence pack.proof: Published dossier + on-chain hash
02
ValidationComing soon
In-vitro biological validation at a contract research org (CRO).proof: CRO contract + in-vitro report
03
Peer review & paperComing soon
Peer-reviewed paper published open-access (preprint + journal).proof: DOI + open-access link + on-chain hash

Current lead

No approved-drug candidate for aganglionic megacolon is corroborated in the literature DeepSearch retrieved. Some conditions are managed with non-pharmacological care — a device, surgery or physical therapy — rather than a medicine; that may be the case here, or the literature we found may simply be too sparse yet to support a drug-repurposing angle.

Molecular view

fragile histidine triad diadenosine triphosphatase (FHIT)FHIT is one of the genes genetically linked to this disease in Open Targets — shown as context, not as a drug target we're pursuing: no approved-drug candidate for this disease is yet corroborated in the literature we found.

Loading structure…
helix sheet frudrag to rotate · scroll to zoom

RCSB Protein Data Bank · entry 1FIT · 1.85 Å · ligand beta-D-fructofuranose (FRU). Experimental structure, not a prediction.

What the evidence adds up to

The five abstracts supplied cover distinct conditions that share the label megacolon, and none of them tests a drug. The 1979 report on toxic megacolon in 27 patients with inflammatory bowel disease describes medical therapy that resolved dilatation in 13 of 19 episodes among patients under the authors' care before onset, and in two of eight seen later in consultation; the remainder required surgery, with no deaths in either group. The 1974 case of aganglionic megacolon in a man who had a colostomy from age 11 months describes closure half a century later using an endorectal pull-through with Boley's modification, with adaptation to normal rectal sensation reported. The 2006 prospective noncontrolled study of 49 patients with Chagasic megacolon treated by anterior rectosigmoidectomy with posterior end-to-side stapled anastomosis reports an overall postoperative complication rate of 20 percent, no mortality, and all patients followed beyond 48 months reporting daily stool elimination without recurrence of constipation. The 2022 case report of idiopathic megabowel in a 65-year-old man describes emergency laparotomy, Hartmann procedure, and subsequent proctectomy with colo-anal anastomosis, with an uneventful recovery and a conclusion that surgical treatment is the best option.

The 2023 correspondence describes a brainstem aggregoma, a light and heavy chain deposition disease, in a 19-year-old woman, with recurrence in 2019 and again in 2020, treated with low-dose radiation therapy of 2400 cGy; after seven months of follow-up she had stable postsurgical changes on MRI, with persistent motor and coordination deficits but preserved cognition. The 2008 study of dilatation of freshly resected obstructed colonic lesions found that a rapid flow rate of water could be achieved after dilatation in eight cases, with perforation in two during maximal dilatation at diameters larger than an endoscopically placed balloon could achieve, and good flow without perforation in three cases using a coaxial balloon. No drug is evaluated in any of these abstracts, and no evidence supports drug repurposing for aganglionic megacolon from this material.

The abstracts are heterogeneous, span five decades, and include only one condition that matches the disease of interest, aganglionic megacolon, represented by a single case report from 1974. The surgical series for Chagasic megacolon and the case reports for toxic megacolon, idiopathic megabowel, and the brainstem aggregoma do not address aganglionic megacolon. What is missing is any controlled trial, any pharmacological intervention, any patient stratification by genetic or histopathological subtype, and any modern case series for aganglionic megacolon in adults; the 1974 case is the only relevant datum, and it concerns surgery, not drug therapy. Funding for prospective studies of medical management in aganglionic megacolon, and trial designs that separate congenital from acquired forms, are absent from this evidence base.

Evidence

Retrieved by DeepSearch across 234,678,978 indexed works and resolved on OpenAlex — ranked by citations, including the results that did not work.

Journal of Clinical Gastroenterology · 1979 · 23 citations

Management of Toxic Megacolon

AbstractTwenty-seven patients with acute toxic dilatation of the colon (TM) as a complication of inflammatory disease of the colon are reported. To emphasize the importance of early recognition and therapy, we separated the patients into two groups: 19 were receiving care by the authors (series A) before the development of TM, and eight were seen in consultation after its onset (series B), TM subsided with medical therapy in 13 episodes among 19 patients in series A and two of eight B. The others underwent surgical therapy. There were no deaths in either group. The differences in management and mortality from other reports suggest a program of surveillance and therapy for this life-threatening situation.

https://doi.org/10.1097/00004836-197912000-00005
Diseases of the Colon & Rectum · 1974 · 11 citations

An unusual case of aganglionic megacolon

AbstractThe case of a man with aganglionic megacolon in whom a colostomy had been established at the age of 11 months is described. The colostomy was closed half a century later, when definitive surgery to correct the disease was done. The procedure used was the endorectal pull-through operation, as described by Soave, with Boley's modification. Adaptation of the adult patient to normal rectal sensation is described.

https://doi.org/10.1007/bf02588111
Diseases of the Colon & Rectum · 2006 · 10 citations

Surgical Treatment of Chagasic Megacolon by Abdominal Rectosigmoidectomy With Immediate Posterior End-to-Side Stapling (Habr-Gama Technique)

AbstractPURPOSE: Various techniques have been used in the surgical treatment of Chagasic megacolon, including sympathectomy, sphincterotomy, anterior abdominal resection with high or low anastomosis, pull-through procedures, and Duhamel technique. However, results have not been consistently satisfactory, with reportedly high morbidity and mortality rates. The purpose of this study was to assess the technique and results of anterior rectosigmoidectomy with immediate posterior colorectal end-to-side stapled anastomosis for the treatment of Chagasic megacolon. METHODS: A prospective, noncontrolled study between 1989 and 2000 analyzed 49 patients with Chagasic megacolon. Preoperative barium enema confirmed Chagasic megacolon in all patients and preoperative anorectal manometry in 33 patients (67 percent). Rectal stump closure was undertaken by surgical stapling in 41 patients (84 percent); mechanical colorectal anastomosis was accomplished with a circular stapler in all patients. RESULTS: Symptoms of intestinal constipation ranged from 6 months to 40 years, Chagas' serology was positive in 98 percent of patients, 41 percent used bowel enemas for evacuation, and 71 percent had a history of fecaloma. The overall postoperative complication rate was 20 percent. Surgical complications occurred in 18 percent, 2 percent had nonsurgical complications, and there was no mortality. Postoperative barium enema was performed in 82 percent of cases, confirming the absence of disease. Postoperative anorectal manometry demonstrated normal resting pressure and rectal capacity; the inhibitory reflex remained absent and rectal sensitivity was increased. Ninety-three percent of patients were followed for more than 48 months, and all patients reported daily stool elimination without recurrence of constipation. CONCLUSIONS: The current study indicates that our technique is effective for surgical treatment of patients with Chagasic megacolon.

https://doi.org/10.1007/s10350-006-0639-6
Brain Pathology · 2023 · 3 citations · open access

Correspondence comprehensive characterization of a brainstem aggregoma (light and heavy chain deposition disease)

AbstractMonoclonal immunoglobulin (Ig) deposition diseases are classified as heavy chain deposition disease (HCDD); light chain deposition diseases (LCDD); and light and heavy chain deposition disease (LHCDD)—deposits of both light [kappa (κ) and lambda (λ)], and heavy [alpha (α), delta (δ), epsilon (ε), gamma (γ), and mu (μ)] Ig chains. These are frequently related to onco-hematological diseases and may form space-occupying lesions (“aggregomas”), rarely reported in the central nervous system (CNS).1-3 We present the first comprehensive report of an infratentorial aggregoma composed by κ light chain, IgA, and J chain deposits, confirmed by liquid chromatography tandem mass spectrometry (LC–MS/MS), RNA-sequencing, and exome sequencing (ES) which will help to build the body of knowledge about this rare and intriguing disease. In 2015, a 19-year-old female presented with slight left-hand tremors and slurred speech. Magnetic resonance imaging (MRI) scan revealed a well-limited 2.1 cm intramedullary mass with mild contrast enhancement, lacking diffusion restriction (Figure 1A–C). The lesion, totally removed en bloc (confirmed by intraoperative ultrasound and postoperative MRI), expanded the brainstem sparing cranial nerves and contained grayish gelatinous material. Histopathology showed hypocellular, eosinophilic, amorphous, colloid-like material Congo red negative under polarized light (controls showing appropriate reactivity), with scant neural cell elements and perivascular chronic inflammation (lymphocytes, plasma cells, and macrophages) (Figure 1D–E). Absence of epithelial lining ruled out the diagnosis of a cyst. Immunohistochemistry (IHC) showed focal GFAP and S100 stain in reactive brain tissue, p53 negative, and low Ki-67 mitotic index making the diagnosis of a neuroepithelial tumor unlikely. CD45 and CD68 stained lymphocytes and macrophages, respectively. Langerin stained scant perivascular cells and CD1a was negative, excluding the diagnosis of Langerhans histiocytosis. Antibodies anti-light Ig chains κ and λ stained inflammatory cells within and around blood vessels, not suggesting a monoclonal process. Bone marrow biopsy was normal, and positron emission tomography/computed tomography with 2-deoxy-2-[fluorine-18]fluoro-d-glucose (18F-FDG) demonstrated non-specific hypermetabolic bilateral cervical lymph nodes, tonsils and posterior nasopharynx (Figure 1F). Colony-stimulating factor (CSF) analyses showed oligoclonal bands absent in the patient's serum, indicating abnormal, non-specific, synthesis of gammaglobulins in the CNS. A comprehensive biochemical workup for infectious, autoimmune, and hematologic diseases returned negative. The patient was treated with steroids and underwent extensive neurorehabilitation. In 2019, she presented with clinical and radiological signs of recurrence, with increase in size of the lesion, involvement of medial right cerebellum and bulbous extension into the right cervical medullary junction and into the lower pontine dorsum at MRI (Figure 1G-I). The supratentorial brain remained stable in appearance. Histopathological aspects were similar to the initial lesion. IHC showed heterogeneous expression of B-cells and plasma cells (CD19 and CD79a), T-cells (CD3, CD4, and CD8, with CD4 > CD8), and macrophages (CD163) markers. Blasts/immature immune cells (TdT and CD34) markers were negative. The κ light chain was diffusely positive and much more obvious than the λ light chain by IHC (Figure 1J–M) and by in situ hybridization. IgM, IgG, and IgG4 stained the background. Polymerase chain reaction of the CSF for Ig heavy chain showed oligoclonal pattern, with multiple peaks, not supporting a diagnosis of lymphoproliferative disease. IgG, IgA, and IgM were within normal ranges in peripheral blood; κ free light chains levels were normal, with decreased λ free light chains levels (4.1—normal: 6.4–22.1 mg/L), and increased κ:λ ratio (1.93—normal: 0.51–1.72), consistent with findings in the histopathologic exam. Hepatic and renal function were always normal. Paired comparator germline/disease-involved enhanced ES was performed on DNA extracted from a comparator germline specimen (peripheral blood) and snap frozen lesional tissue to identify single nucleotide variations, small insertion–deletion (indel) events, and copy number (CN) alterations. No medically meaningful germline alterations in the setting of cancer or other known disease-associated genes were detected. The pass-filter somatic variant with the highest frequency within the lesional tissue was NM_003966.3(SEMA5A):c.2275G>A:p.Gly759Ser (8.8% variant allele frequency [VAF]). Only two pass-filter variants were observed in cancer-associated genes: NM_139215.3(TAF15):c.52T>C:p.Ser18Pro (5.2% VAF) and NM_005228.5(EGFR):c.549C>A:p.His183Gln (4.5% VAF). Each of these variants would be considered a variant of uncertain significance. Fresh frozen sample of the lesion content was submitted to LC/MS–MS, which detected 475 abundant proteins, compared to thousands typically detected in neoplastic tissue. The top 10 most abundant proteins are shown in Figure 2A, including increased abundance of IgA and κ light chain. The increased κ light chain was previously seen by IHC and retrospective IHC for IgA showed diffusely positive stain in the lymphoplasmacytic infiltrate (Figure 1K). The diagnostic was of a LHCDD constituted by κ light chain, IgA, and J chain. RNA-sequencing was performed from the lesional tissue to evaluate for gene overexpression and aberrantly activated pathways. This analysis confirmed overexpression of IGHA1, IKGC, and JCHAIN relative to an institutional cohort of pediatric CNS tumors (N = 43) (Figure 2B), and consistent with the prior proteomics and IHC results. Ingenuity pathway analysis performed from RNA-sequencing of the lesional tissue identified multiple inflammatory pathways to be activated, including the neuroinflammation signaling pathway (Figure 2C). Herein we describe a unique case of LHCDD presenting as an aggregoma in the brainstem of a young adult. LCDD and LHCDD of the brain have multiple radiologic and histopathologic overlaps and are frequently reported together in small series.2, 3 The largest series of CNS LHCDD reported six adult patients (34–70 years) all with supratentorial lesions, in which three out of five brain hemisphere lesions were associated CNS/systemic lymphoma and κ light chain/IgG deposits.2 Recently a LHCDD with κ light chain/IgA deposits was reported in a 31-year-old patient with multiple large, non-enhancing intracerebral lesions, which recurred after only 7-month follow-up which demanded treatment with radiation therapy (RT) analogous to the scheme used for plasmacytoid malignancy1 despite not having a definite diagnosis of lymphoproliferative disease. Although ES did not identify any clearly medically meaningful variants associated with the disease, the variants in SEMA5A and TAF15 are intriguing given the biology of these genes; however, the contribution of these variants to the disease process for this patient is unclear at present. SEMA5A encodes Semaphorin-5A, an integral membrane protein involved in inflammation, immunity, and axonal guidance during neurodevelopment. SEMA5A upregulation has been related to enhanced T-cell activation in rheumatoid arthritis4 and several psychiatric and neurodegenerative diseases.5 Alterations of TAF15, which encodes a member of the TET family of RNA-binding proteins, have been described in amyotrophic lateral sclerosis and frontotemporal dementia.6, 7 In oncology, high SEMA5A expression was related to poor prognosis in multiple myeloma patients8 and TAF15-ZNF384 gene fusion have been described in a rare form of acute lymphoblastic leukemia.9 Comprehensive molecular profiling, including proteomics, ES, and RNA-sequencing, and extensive histopathological workup helped to refine the diagnosis for this individual to LHCDD constituted by κ light chain, IgA, and J chain. Taken together, our findings suggest that the pathogenesis of CNS LHCDD is inflammatory rather than neoplastic in nature, and a proposed mechanism of the lesion is shown in Figure 2D. As caveats of this report, the gene variants occurred at very low allelic frequency and given the specimen quality, an artifact could not be ruled out. Therefore, the meaning of the variants identified on ES remain indeterminate. In addition, the transcriptional consequences of the gene variants were not observed at protein level by LC–MS/MS because only the colloid-like material was analyzed, therefore the results most probably simply reflect the secreted products of the plasma cell infiltration. In 2020, the patient presented signs of local recurrence at MRI and received treatment with low dose (2400cGY) RT. Currently, she presents only stable postsurgical changes at MRI after 7 months of completing the RT treatment. Her motor and coordination deficits secondary to the surgeries persist, however, her cognitive functions are preserved, and she achieved a graduate school-level education after the diagnosis. The patient does not have the diagnosis of neurodegenerative or hematological disease after long-term follow-up. However, the implication of SEMA5A in plasmacytic neoplasia outcome probably warrants the need of close clinical surveillance for the patient. Our results highlight the genomic, transcriptomic, and proteomic landscape as observed in a patient with LHCDD of the CNS and set forward a path for future validation of the observed findings in additional patients. Performed critical analysis of the LC–MS/MS results and histopathologic correlation: Aline P. Becker. Performed critical analysis of the LC–MS/MS results and pathway analysis: Erica H. Bell, Jessica L. Fleming, and Arnab Chakravarti. Provided pediatric and adult onco-hematological care to the patient: Diana S. Osorio, Pierre Giglio, and Don Benson. Performed and analyzed the genomic workup, RNA sequencing, and DNA sequencing: Catherine E. Cottrell, Elaine R. Mardis, Katherine E. Miller, Kathleen M. Schieffer, and Benjamin J. Kelly. Performed the interpretation of the radiological exams (MRI and PET/CT): Mina S. Makary and Wayne Slone. Performed both surgeries and clinical follow-up of the patient: Jeffrey Leonard. Performed the histopathological analyses of the primary and recurrent lesion: Samir B. Kahwash and Daniel R. Boué. Proposed mechanism of LHCDD: Samir B. Kahwash. All authors had major contributions in writing the manuscript, read and approved the final version submitted to publication. The authors thank David W. Ellison, MD, PhD at St. Jude's Children's Research Hospital, for the pathology review, important for consensus diagnosis in this case; Joshua Palmer, MD, for the support with the Radiation Oncology reports; Blake E. Sells, MD, PhD candidate for the support in pathway analysis, and Jennifer Thurmond, for the support in the consent and authorization form signature. This study received funding from R01CA108633, R01CA169368, RC2CA148190, U10CA180850-01 (NCI), Brain Tumor Funders Collaborative Grant, and the Ohio State University CCC (all to Arnab Chakravarti). The authors declare no conflict of interest. The patient consented to the study in protocols from both NCH (IRB17-00206) and OSU (2019C0084) and provided written consent to publication of the case. The data that support the findings of this study are available on request from the corresponding author. The data are not publicly available due to nature of the study (case report), as the containing information would compromise the privacy of the patient.

https://doi.org/10.1111/bpa.13154
Annals of Medicine and Surgery · 2022 · 0 citations · open access

Idiopathic megabowel causing acute bowel obstruction: A case report

AbstractBackground: Idiopathic megabowel is a rare condition. Its physiopathology is still unclear. We report a case of a patient presenting with acute bowel obstruction due to idiopathic megacolon and megarectum that was successfully treated with proctocolectomy. Case presentation: A 65-year-old man, with a history of chronic constipation, presented to the emergency with acute bowel obstruction symptoms.His CT scan on admission showed a very dilated rectum and sigmoid colon filled with faeces. The patient was managed conservatively.Due to the deterioration of his condition. We opted for an emergency laparotomy and it revealed the important dilation of the descending colon, the sigmoid colon, and the rectum leading to a Hartmann procedure.degenerative lesions of the smooth muscle layers were seen on the histopthological report and the diagnosis of rectosigmoid idiopathic megacolon was made.Postoperatively, we performed a rectoscopy that showed a distended rectum full of faeces.We performed a proctectomy with colo-anal anastomosis. He had an uneventful recovery. Conclusion: Idiopathic megacolon is a rare condition. The pathogenesis is still unclear. Surgical treatment is the best option to prevent complications and to improve the quality of life of the patient.

https://doi.org/10.1016/j.amsu.2022.103665
Digestive Surgery · 2008 · 0 citations

A Role for the Endoscopist in the Obstructed Colon?

AbstractA method for the dilatation of the acutely obstructed colon is introduced, and the results of dilating 8 freshly resected obstructing colonic lesions are presented. It was found that a rapid flow rate of water could be achieved after dilatation of the strictures compared with the flow rate before dilatation. Only 2 of the cases perforated during maximal dilatation, and in both of these the diameter at dilatation was larger than could be achieved with an endoscopically placed balloon, and in both a good flow rate was achieved at smaller diameters prior to perforation. In 3 cases a coaxial balloon was used to dilate the stricture, and in each of these cases a good flow rate was achieved without perforation. As the mortality for emergency resection is 10 times that for elective resection, we propose that colonic decompression with a coaxial balloon may allow decompression and elective resection, hopefully with a reduction in operative mortality.

https://doi.org/10.1159/000171846

Disease module: DeepOracle (Open Targets). Structures: RDKit from PubChem SMILES. Literature: retrieved by DeepSearch across 234,678,978 indexed works using Disease Ontology synonyms, resolved on OpenAlex.

DeCure is a research and publication project, not medical advice and not a treatment. "DeCure for X" describes a research goal, not a claim that a cure exists. Backing a cure is a contribution to fund the research — it is not an investment, and confers no yield, royalty, equity or IP ownership. Papers are published open-access by the DeCure.ai DAO.