DeCure's autonomous Cancer AI scientist is researching a drug-repurposing hypothesis for acinar lung adenocarcinoma — screening already-approved drugs against its 41-gene Open Targets disease module to publish open-access research. Research is fast; the path to publication is funded in milestone stages.
Disease moduleAcinar lung adenocarcinoma maps to a 41-gene Open Targets module — the target space DeCure's AI scientist screens approved drugs against.
DeCure.ai methodSignature reversal (LINCS) plus network proximity (STRING) rank already-approved drugs likely to perturb this module — the same engine that produces DeCure.ai's repurposing hypotheses.
Repurposing thesisScreening approved medicines against this disease module, then publishing the evidence for the strongest candidate. Known pharmacology and human exposure data make the first question sharper — they do not establish safety or efficacy in a new indication.
Research record
01
ResearchComing soon
Candidate research + dossier — target rationale, drug-repurposing thesis and evidence pack.proof: Published dossier + on-chain hash
02
ValidationComing soon
In-vitro biological validation at a contract research org (CRO).proof: CRO contract + in-vitro report
03
Peer review & paperComing soon
Peer-reviewed paper published open-access (preprint + journal).proof: DOI + open-access link + on-chain hash
Current lead
No approved-drug candidate for acinar lung adenocarcinoma is corroborated in the literature DeepSearch retrieved. Some conditions are managed with non-pharmacological care — a device, surgery or physical therapy — rather than a medicine; that may be the case here, or the literature we found may simply be too sparse yet to support a drug-repurposing angle.
Molecular view
clathrin heavy chain (CLTC) — CLTC is one of the genes genetically linked to this disease in Open Targets — shown as context, not as a drug target we're pursuing: no approved-drug candidate for this disease is yet corroborated in the literature we found.
Loading structure…
helix sheet 4-nitrophenyldrag to rotate · scroll to zoom
RCSB Protein Data Bank · entry 6E4L · 1.6 Å · ligand 5-bromo-N-(4-nitrophenyl)thiophene-2-sulfonamide (HRS). Experimental structure, not a prediction.
What the evidence adds up to
In acinar-predominant stage IA lung adenocarcinoma, the proportion of the lepidic subtype carries prognostic weight. A review of 215 patients found that those with 20% or more lepidic component had significantly lower recurrence (p = 0.008), better disease-free survival (p = 0.007) and overall survival (p = 0.046) than those with less. Multivariate analysis identified lymphovascular invasion (p = 0.006) and a lepidic proportion below 20% (p = 0.036) as independent predictors of worse disease-free survival. In a separate cohort of 752 stage I patients, acinar-predominant tumours were the most common (44.7%), and an acinar subtype size greater than 1 cm, or the mere presence of micropapillary or solid subtypes, independently predicted recurrence (area under the ROC curve 0.710, p < 0.001). For stage IA non-small cell lung cancer generally, a 2004 study of 224 patients reported 1-, 3- and 5-year survival rates of 89%, 76% and 66%, with better survival for tumours ≤ 2 cm, in females, and in bronchoalveolar adenocarcinoma; limited resections carried a higher local recurrence rate.
For advanced disease with specific molecular drivers, a 2024 case report describes a patient with class III BRAF G466V mutation who achieved a partial response after three months of dabrafenib and trametinib, with marked symptomatic improvement enabling self-care. This is a single case, and the authors note that class III BRAF mutations generally lack approved targeted options and carry unfavourable outcomes. In EGFR-mutant resectable disease, a 2025 multicentre retrospective study of 24 patients receiving neoadjuvant targeted therapy reported an objective response rate of 83.3% (20/24), a major pathologic response rate of 37.5% (9/24), and pathological complete response in 2 patients (8.3%). All achieved R0 resection, with no grade 3 or higher adverse events; the 1-year and 2-year disease-free survival rates were 91.1% and 86.2%, with no deaths at a median follow-up of 33 months. Adverse events were grade 1–2 in 54.2% of patients, most commonly rash (16.7%), mouth sores (8.3%) and diarrhoea (8.3%).
Preclinical work on SUN1 silencing in A549 and 95D lung adenocarcinoma cells showed reduced proliferation and colony formation, with G0/G1 cell cycle arrest and decreased expression of Cyclin D1, CDK6 and CDK2. This is in vitro evidence only, with no clinical data. Regarding surgical strategy, an authors’ response to a prior study defends the value of investigating lobectomy versus segmentectomy for stage I acinar and papillary predominant tumours, citing acceptable intraoperative frozen section accuracy for acinar pattern (sensitivity 87.6%, specificity 65.4%) and papillary predominant tumours (sensitivity 50%, specificity 96.6%). They acknowledge that chemotherapy data from the SEER database are incomplete, and cite evidence that adjuvant chemotherapy did not improve disease-specific survival or recurrence in stage IB patients without solid or micropapillary patterns, nor in those with minor solid or micropapillary components, after propensity-score matching.
What remains missing is prospective validation of the lepidic proportion and acinar size thresholds as reproducible clinical tools, and confirmation of the surgical equivalence findings in other centres. The dabrafenib and trametinib result in class III BRAF is a single anecdote requiring larger series. The neoadjuvant targeted therapy data come from only 24 patients with short follow-up and no comparator arm. No randomised trial has yet established whether neoadjuvant targeted therapy improves survival over surgery alone in EGFR-mutant resectable disease, and the SUN1 findings have not progressed beyond cell lines.
Evidence
Retrieved by DeepSearch across 234,678,978 indexed works and resolved on OpenAlex — ranked by citations, including the results that did not work.
Thoracic Cancer · 2021 · 16 citations · open access
Prognostic impact according to the proportion of the lepidic subtype in stage <scp>IA</scp> acinar‐predominant lung adenocarcinoma
AbstractBACKGROUND: Adenocarcinoma is the most common type of lung cancer and most adenocarcinomas have heterogeneous subtypes. Acinar-predominant adenocarcinoma is the most common. This study aimed to identify the prognostic impact of other mixed histological subtypes in acinar-predominant lung adenocarcinoma. METHODS: The medical records of patients with pathological stage IA acinar-predominant lung adenocarcinoma between January 2010 and April 2016 were reviewed. The patients were divided into two groups according to the proportion of the lepidic subtype, with a cutoff value of 20%, and prognostic factors were analyzed. RESULTS: A total of 215 patients with stage IA acinar-predominant adenocarcinoma were reviewed. The 20% or more lepidic subtype group had a low value of SUVmax (p = 0.001), good differentiation (p < 0.001) and a low incidence of the solid histological subtype (p = 0.016). Recurrence was significantly lower in the 20% or more lepidic subtype group (p = 0.008). The disease-free survival (p = 0.007) and overall survival (p = 0.046) were significantly different between the two groups. Multivariate analysis showed that lymphovascular invasion (p = 0.006) and no or less than 20% lepidic subtype (p = 0.036) were significant prognostic factors for disease-free survival. CONCLUSIONS: The lepidic proportion may be useful to predict recurrence in acinar-predominant stage IA lung adenocarcinoma.
Asian Cardiovascular and Thoracic Annals · 2004 · 14 citations
Impact of Size, Histology, and Gender on Stage IA Non-Small Cell Lung Cancer
AbstractThe aim of this study was to assess which prognostic factors could influence survival in surgically treated stage IA non-small cell lung cancer. The records of 224 consecutive patients with pathological stage IA after radical surgery were reviewed retrospectively. Overall 1, 3 and 5-year survival rates were 89%, 76%, and 66%. Nearly half of the deaths were unrelated to the original cancer. There was no difference in survival attributable to preoperative pulmonary function, age at operation, or extent of resection. However, patients with limited resections had a higher rate of local recurrence. Survival was better with a smaller size of tumor (= 2 cm), in the female sex, and in cases of bronchoalveolar adenocarcinoma.
OncoTargets and Therapy · 2017 · 4 citations · open access
SUN1 silencing inhibits cell growth through G0/G1 phase arrest in lung adenocarcinoma
AbstractPURPOSE: Cytoskeleton is critical for carcinoma cell proliferation, migration, and invasion. Sad-1 and UNC-84 domain containing 1 (SUN1) is one of the core linkers of nucleoskeleton and cytoskeleton. However, the functions of SUN1 in lung adenocarcinoma are largely unknown. METHODS: In this study, we first transduced the lentivirus delivering the short hairpin RNA (shRNA) against SUN1 to lung adenocarcinoma cells (A549 and 95D cells) with high efficiency. After lentivirus infection, quantitative real-time polymerase chain reaction and Western blotting were used to detect the expressions of SUN1 mRNA and protein. The cell proliferation and colony formation were detected by MTT assay and colony formation assay, respectively. The cell distribution in the cell cycle was analyzed by flow cytometry. RESULTS: Both mRNA and protein levels of SUN1 were significantly decreased in A549 and 95D cells after lentivirus infection, as indicated by quantitative real-time polymerase chain reaction and Western blot. Next, we found that cell proliferation and colony formation were markedly reduced in SUN1 silenced cells. Moreover, suppression of SUN1 led to cell cycle arrest at G0/G1 phase. Furthermore, Cyclin D1, CDK6, and CDK2 expressions were obviously reduced in A549 cells after SUN1 silencing. CONCLUSION: These results suggest that SUN1 plays an essential role in proliferation of lung adenocarcinoma cells in vitro and may be used as a potential therapeutic target for the treatment of lung adenocarcinoma in the future.
OncoTargets and Therapy · 2024 · 3 citations · open access
Clinical Response of Advanced Lung Adenocarcinoma with Class III BRAF G466V Missense Mutation to Dabrafenib and Trametinib: A Case Report
AbstractAim: BRAF is a pivotal driver gene in cancer development. Based on this, the combination of dabrafenib and trametinib was approved for treating NSCLC patients with BRAF V600E mutations. However, the majority of BRAF mutations in lung cancer are non-V600E variants, particularly class III mutants, which currently lack targeted therapeutic options and result in unfavorable clinical outcomes. Case Presentation: We present a case of advanced lung adenocarcinoma with a class III BRAF G466V mutation. The patient experienced significant pleural and pericardial effusion, leading to chest tightness and an inability to lie flat. Severe pain and limited mobility from lumbar destruction seriously affected the patient’s quality of life. Due to the patient’s intolerance to chemotherapy, dabrafenib and trametinib combination therapy was chosen. After three months of targeted therapy, the patient’s overall condition significantly improved, enabling self-care, and achieving partial response (PR) as an indicator of treatment efficacy. Conclusion: The combination therapy of dabrafenib and trametinib demonstrates remarkable clinical benefits for lung adenocarcinoma patients with the BRAF G466V mutation. Targeted therapy should be considered for patients with BRAF class III mutations, especially those in poor general condition and may not tolerate chemotherapy. Keywords: case report, NSCLC, BRAF G466V, targeted therapy, dabrafenib, trametinib
Journal of Thoracic Disease · 2024 · 1 citations · open access
Prognostic significance using histologic subtype in stage I lung adenocarcinoma
AbstractBackground: The pathologic feature of lung adenocarcinoma is extremely complex because the prognosis of same-stage lung adenocarcinoma significantly differs because of pathological diversity. This study aimed to evaluate the clinical association between histologic subtype and recurrence. Further, the prognostic significance of histologic subtype in stage I lung adenocarcinoma was examined. Methods: The medical records of 752 patients with pathological stage I lung adenocarcinoma were reviewed. The size of each histologic subtype was assessed. Receiver operating characteristic curve analysis was performed to identify the prognostic significance of histologic subtype. Univariate and multivariate analyses were conducted to validate the prognostic role of recurrence indicator. Results: The median age of the participants was 64 years, and female patients were predominant. The acinar-predominant subtype (44.7%) was the most common. According to each subtype size for predicting recurrence, >1 cm size of acinar subtype showed significant difference and the only presence of micropapillary and solid subtype themselves showed significant difference. As the area under the receiver operating characteristic curve for recurrence, an acinar subtype size of >1 cm, or the presence of the micropapillary or solid subtypes was 0.710 (P<0.001). This variable was significant for recurrence in the multivariate analysis (P<0.001). Conclusions: The presence of micropapillary, solid subtype or an acinar size of >1 cm are an independent prognostic factor of stage I lung adenocarcinoma. A more sizable acinar subtype affects the prognosis of stage I lung adenocarcinoma. This factor can provide additional information for predicting prognosis and can be a valuable supplement for the current classification.
Cancer Medicine · 2022 · 0 citations · open access
Authors' response: Comment on “clinicopathological features, survival outcomes, and appropriate surgical approaches for stage I acinar and papillary predominant lung adenocarcinoma”
AbstractSome concerns were raised related to our study in the comments, which was published earlier in Cancer Medicine “Clinicopathological features, survival outcomes, and appropriate surgical approaches for stage I acinar and papillary predominant lung adenocarcinoma” (Article ID: CAM43012, Article DOI: 10.1002/cam4.3012, Internal Article ID: 16708831). They raised that it was of little significance to investigate appropriate surgical procedures for patients with acinar predominant adenocarcinoma (ACN) and papillary predominant adenocarcinoma (PAP) because prediction derived from intraoperative frozen section (FS) for histologic patterns could not be precise enough, and the chemotherapy data in our study, which was from the Surveillance, Epidemiology, and End Results (SEER) database, might not be reliable enough. For the first concern, the prognostic value of the International Association for the Study of Lung Cancer/American Thoracic Society/European Respiratory Society international multidisciplinary lung adenocarcinoma classification has been confirmed,1-3 thus, from the perspective of surgeons, it is necessary to investigate the appropriate surgical approaches of the subtype of lung adenocarcinoma to make a better scheme of surgical treatment and surveillance after operation. Although several studies have reported that prediction derived from FS for histologic patterns could not be precise enough,4, 5 it should be noted that the accuracy rate of FS for predicting ACN (76%) and PAP (85%) and interobserver agreement (κ = 0.481 and 0.527) was acceptable.4 And acinar pattern was the primary histological pattern that was most likely to be correctly identified on FS (sensitivity 87.6%; specificity 65.4%), while papillary predominant tumors also had moderate sensitivity (50%) and high specificity (96.6%).5 Besides, taking more sections during FS may help to improve the diagnostic accuracy.4 Furthermore, with the development of technology, some new techniques, such as inflation treatment for FS, may help to improve the diagnostic accuracy.6 Since our research indicated that segmentectomy was equivalent to lobectomy for stage I ACN while lobectomy remained the optimal procedure for stage I PAP, we believe that if these results could be confirmed by more data from other medical centers, there would be great demands for improving the accuracy of rapid intraoperative diagnosis. In addition, other methods, such as artificial intelligence and computed tomography, could also assist in diagnosis before operation.7-9 Last but not least, even though intraoperative FS did not give the correct result, our result could be referred to make and adjust the plan of treatment and surveillance after the operation, especially for those whose resected extension was insufficient. As for the second concern, we agree that the chemotherapy data from the SEER database are incomplete. It is one of the limitations of our study, however, it is the best we can do, for which those patients who did not receive chemotherapy and those whose chemotherapy history was unknown could not be distinguished in SEER database. Besides, it should be noted that Qian et al reported that adjuvant chemotherapy was a prognostic factor only for patients with stage IB lung adenocarcinoma with solid or micropapillary predominant pattern, however, it did not contribute to both disease-specific survival and recurrence neither in solid/micropapillary-negative subgroup (disease-specific survival: p = 0.421; recurrence: p = 0.189) nor in solid/micropapillary-minor subgroup (disease-specific survival: p = 0.098; recurrence: p = 0.886) after propensity-score matching.10 In line with this, similar results were observed in other researches.11, 12 These data indicate that chemotherapy might have no effect on the survival of patient with stage I ACN or PAP. What is more, some studies with high quality also draw conclusions based on the data from SEER database, although some information, such as degree of differentiation and whether receive surgery or chemotherapy, was incomplete.13, 14 Furthermore, we are going to collect the data in our medical center to validate the conclusion in the future. To sum up, it is necessary to investigate the proper surgical plan for patients with ACN or PAP for a better scheme of surgical treatment and surveillance after operation, although the accuracy of intraoperative FS for predicting the histologic patterns of lung adenocarcinoma is not satisfactory enough so far. Besides, we agree that chemotherapy data from the SEER database are incomplete, however, chemotherapy might have no effect on the survival of patient with stage I ACN and PAP. Sincerely, Kaican Cai. Head of the Department of Thoracic Surgery, Nanfang Hospital, Southern Medical University. The authors declare no competing financial interests. DL, JY, and XL wrote the manuscript. HW and KC revised the manuscript. All authors read and approved the final manuscript. The data that support the findings of this study are available from the corresponding author upon reasonable request.
[Application Value of Neoadjuvant Targeted Therapy in Patients with EGFR-mutant Resectable Lung Adenocarcinoma].
AbstractBACKGROUND: The proportion of patients with non-small cell lung cancer (NSCLC) harboring epidermal growth factor receptor (EGFR) mutations is relatively high in China. However, these patients currently lack significant benefits from available neoadjuvant treatment options. This study aims to explore the potential application value of neoadjuvant targeted therapy by evaluating its efficacy and safety in patients with EGFR-mutant resectable lung adenocarcinoma. METHODS: A multicenter retrospective study was used to analyze the treatment effect of patients with stage IIA-IIIB EGFR-mutant lung adenocarcinoma who underwent surgical resection after receiving neoadjuvant targeted therapy from July 2019 to October 2024. RESULTS: A total of 24 patients with EGFR-mutant lung adenocarcinoma from three centers were included in this study. All patients successfully underwent surgery and achieved R0 resection of 100.0%. The objective response rate (ORR) was 83.3% (20/24) . The major pathologic response (MPR) rate was 37.5% (9/24), with 2 patients (8.3%) achieving pathological complete response (pCR). During neoadjuvant therapy, 13 out of 24 patients (54.2%) experienced adverse events of grade 1-2, with no occurrences of ≥ grade 3. The most common treatment-related adverse events were rash (n=4, 16.7%), mouth sores (n=2, 8.3%), and diarrhea (n=2, 8.3%). The median follow-up time was 33.0 months, no deaths occurred in all patients, and the overall survival (OS) rate was 100.0%. The 1-year disease-free survival (DFS) rate was 91.1%, and the 2-year DFS rate remained at 86.2%. CONCLUSIONS: The application of neoadjuvant targeted therapy in patients with EGFR-mutant resectable lung adenocarcinoma is safe and feasible, and is expected to become a highly promising neoadjuvant treatment option for the patients with EGFR-mutant lung adenocarcinoma.
Disease module: DeepOracle (Open Targets). Structures: RDKit from PubChem SMILES. Literature: retrieved by DeepSearch across 234,678,978 indexed works (targeted per-candidate search), resolved on OpenAlex.
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